View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: D611-LTR4-TNT-insertion-4 (Length: 687)

Name: D611-LTR4-TNT-insertion-4
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] D611-LTR4-TNT-insertion-4
D611-LTR4-TNT-insertion-4
[»] scaffold0032 (1 HSPs)
scaffold0032 (227-678)||(70965-71416)
[»] chr5 (15 HSPs)
chr5 (428-678)||(22847542-22847792)
chr5 (497-678)||(23273685-23273864)
chr5 (465-678)||(16701369-16701569)
chr5 (48-378)||(28253407-28253742)
chr5 (7-364)||(28142442-28142804)
chr5 (221-378)||(112273-112431)
chr5 (9-359)||(15544129-15544484)
chr5 (202-378)||(26307879-26308058)
chr5 (18-161)||(29263449-29263592)
chr5 (187-378)||(19904187-19904388)
chr5 (218-371)||(32448252-32448407)
chr5 (571-678)||(27735487-27735593)
chr5 (253-348)||(17830425-17830520)
chr5 (601-676)||(29830844-29830919)
chr5 (10-46)||(23265234-23265270)
[»] scaffold0561 (1 HSPs)
scaffold0561 (411-670)||(1004-1265)
[»] chr7 (24 HSPs)
chr7 (375-678)||(9652413-9652717)
chr7 (76-378)||(21912127-21912433)
chr7 (10-159)||(9500524-9500672)
chr7 (187-378)||(21884803-21884996)
chr7 (187-348)||(20174828-20174990)
chr7 (600-678)||(19335103-19335181)
chr7 (187-378)||(36117205-36117398)
chr7 (210-305)||(13707766-13707864)
chr7 (18-107)||(18466093-18466181)
chr7 (76-158)||(5797656-5797739)
chr7 (10-111)||(10937682-10937782)
chr7 (10-110)||(16306774-16306874)
chr7 (187-371)||(10339344-10339530)
chr7 (603-678)||(12356550-12356625)
chr7 (233-344)||(9063108-9063221)
chr7 (198-252)||(33035754-33035808)
chr7 (235-303)||(4901621-4901691)
chr7 (10-111)||(9864245-9864345)
chr7 (600-678)||(10203147-10203225)
chr7 (625-675)||(12153238-12153288)
chr7 (92-164)||(14754998-14755071)
chr7 (38-161)||(18449643-18449767)
chr7 (24-105)||(36117472-36117552)
chr7 (205-302)||(18466283-18466382)
[»] chr4 (14 HSPs)
chr4 (375-678)||(13523438-13523742)
chr4 (39-377)||(19900687-19901023)
chr4 (188-378)||(15049732-15049923)
chr4 (188-378)||(15104501-15104692)
chr4 (589-677)||(20323372-20323460)
chr4 (10-163)||(1833462-1833616)
chr4 (208-348)||(10107306-10107448)
chr4 (191-378)||(40214978-40215167)
chr4 (18-177)||(22526452-22526613)
chr4 (10-111)||(11094044-11094143)
chr4 (9-134)||(40215214-40215338)
chr4 (10-163)||(9052753-9052908)
chr4 (10-46)||(15050066-15050102)
chr4 (10-46)||(15104322-15104358)
[»] chr2 (10 HSPs)
chr2 (474-678)||(23140556-23140759)
chr2 (474-678)||(23552346-23552549)
chr2 (187-291)||(15454978-15455084)
chr2 (252-348)||(30695152-30695248)
chr2 (209-378)||(9239423-9239594)
chr2 (208-348)||(18932506-18932648)
chr2 (284-376)||(8502815-8502907)
chr2 (10-111)||(28770361-28770462)
chr2 (39-122)||(30900755-30900838)
chr2 (18-152)||(9239234-9239364)
[»] scaffold0103 (1 HSPs)
scaffold0103 (474-678)||(34689-34892)
[»] chr6 (9 HSPs)
chr6 (10-377)||(24187875-24188251)
chr6 (433-678)||(24454085-24454315)
chr6 (74-378)||(23087984-23088290)
chr6 (17-363)||(28585691-28586042)
chr6 (199-365)||(10503853-10504019)
chr6 (188-275)||(20721917-20722006)
chr6 (252-348)||(15613828-15613925)
chr6 (189-348)||(9386325-9386485)
chr6 (600-678)||(25931269-25931347)
[»] chr3 (10 HSPs)
chr3 (378-639)||(14888854-14889117)
chr3 (74-378)||(23055817-23056118)
chr3 (15-125)||(20397670-20397780)
chr3 (187-252)||(21074301-21074366)
chr3 (18-125)||(821417-821525)
chr3 (598-678)||(7654173-7654253)
chr3 (10-163)||(8556995-8557148)
chr3 (74-152)||(13908129-13908207)
chr3 (209-275)||(20885471-20885539)
chr3 (209-246)||(28729115-28729152)
[»] chr1 (12 HSPs)
chr1 (570-678)||(17199425-17199533)
chr1 (10-161)||(6501420-6501571)
chr1 (474-678)||(15546558-15546762)
chr1 (570-674)||(29983622-29983726)
chr1 (209-365)||(15053125-15053282)
chr1 (539-678)||(20063877-20064016)
chr1 (216-348)||(10064260-10064394)
chr1 (10-159)||(24267651-24267801)
chr1 (571-678)||(13359191-13359298)
chr1 (600-678)||(17316967-17317045)
chr1 (209-274)||(26810156-26810223)
chr1 (10-50)||(26540975-26541015)
[»] scaffold0394 (1 HSPs)
scaffold0394 (188-378)||(13557-13748)
[»] chr8 (8 HSPs)
chr8 (187-349)||(24119435-24119599)
chr8 (10-163)||(15238879-15239031)
chr8 (373-666)||(16647261-16647554)
chr8 (10-152)||(5052803-5052941)
chr8 (206-378)||(28847198-28847371)
chr8 (211-365)||(17972458-17972611)
chr8 (209-275)||(15065108-15065176)
chr8 (76-151)||(17965189-17965265)
[»] scaffold1017 (1 HSPs)
scaffold1017 (205-378)||(2908-3082)
[»] scaffold0238 (1 HSPs)
scaffold0238 (10-163)||(19190-19344)
[»] scaffold0006 (2 HSPs)
scaffold0006 (39-163)||(222898-223023)
scaffold0006 (40-163)||(18605-18729)
[»] scaffold0136 (1 HSPs)
scaffold0136 (54-150)||(15344-15442)
[»] scaffold0085 (1 HSPs)
scaffold0085 (208-348)||(22509-22651)
[»] scaffold0672 (1 HSPs)
scaffold0672 (39-102)||(1841-1905)
[»] scaffold0125 (1 HSPs)
scaffold0125 (602-678)||(6768-6844)


Alignment Details
Target: scaffold0032 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 227 - 678
Target Start/End: Complemental strand, 71416 - 70965
Alignment:
Q  227 tcgtatggttttactacctaccagctcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  71416 tcgtatggttttactacctaccagctcaagttgcacctgttgatcacacatgtaggtacgtgtggggtcttactctctcagaggtaagggttcattgccc 71317  T
Q  327 tccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgttggtcagtatgacaatgtaatacgcactaaaaaggggtgaatatcgttt 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  71316 tccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgttggtcggtatgacaatgtaatacgcactaaaggggggtgaatatcgttt 71217  T
Q  427 caaaatttaaatcgagtttgtgcgaaagtgtttttagtaaaagaaaatacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaaga 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71216 caaaatttaaatcgagtttgtgcgaaagtgtttttagtaaaagaaaatacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaaga 71117  T
Q  527 ctatgttcaagctaagattaactttgacttgagagatcttaattaatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaa 626  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  71116 ctatgttcaagctaagattaactttgaattgagagatgttaattaatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcacaa 71017  T
Q  627 tctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71016 tctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 70965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 5e-67; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 428 - 678
Target Start/End: Complemental strand, 22847792 - 22847542
Alignment:
Q  428 aaaatttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaaaata-cgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaag 525  Q
    |||||||||||||||||||| |  |||| |||||||||||| | | ||  | |||| || ||||||| ||||||||||||||||||||||||||||||||    
T  22847792 aaaatttaaatcgagtttgtagtcaaagcgtttttagtaaaggcatattgcaacttatcggattatgtaaggtttaataacaatgataaaaaataacaag 22847693  T
Q  526 actatgttcaagctaagattaactttgacttgagagatcttaattaatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaa 625  Q
    |||||||||||||||||||| ||||||| |||||||||  |||  ||||||||||||||||||||||||||||||||| |||| |||||||  ||||| |    
T  22847692 actatgttcaagctaagatttactttgaattgagagattctaagaaatcttaatacaatccaatattaacacaattcatacaaaatacaaa--aagcaca 22847595  T
Q  626 atctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||||||| || |||| |||||| |||||||||||||||||||||||    
T  22847594 atctcaaaccaaacttaaaaacaattaattaattatactaattaacacaattg 22847542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 497 - 678
Target Start/End: Original strand, 23273685 - 23273864
Alignment:
Q  497 gtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaatcttaatacaatccaatattaaca 596  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  ||| |||||||||| ||||||||||||||||    
T  23273685 gtttaataacaatgataaaaaataacaagactatgttcaagttaagattaactttgaattgagagattctaagtaatcttaatgcaatccaatattaaca 23273784  T
Q  597 caattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    ||||| |||  | ||||||||||| || |||||||||| ||||||| |||| ||||||||  ||||||||||||||||||||    
T  23273785 caatttacaacaaatacaaaacaaacacaatctcaaacaaaacctaaaaacaattaatca--tatactaattaacacaattg 23273864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 465 - 678
Target Start/End: Complemental strand, 16701569 - 16701369
Alignment:
Q  465 aaaagaaaatacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatc 564  Q
    |||| ||| |||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||     
T  16701569 aaaaaaaattacgacttatcggattatgcaaggttcattaacaatgataaaaaataacaagactatgttcaagctaagattaactttgaattgaaagatt 16701470  T
Q  565 ttaattaatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatact 664  Q
     ||  ||||| |||||||             |||| ||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||| |||||    
T  16701469 ctatgtaatcataataca-------------acaaatcacagaagatacaaaacaagcacaatctcaaaccaaacctaaaaacaattaatcaataatact 16701383  T
Q  665 aattaacacaattg 678  Q
    ||||||||||||||    
T  16701382 aattaacacaattg 16701369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 48 - 378
Target Start/End: Original strand, 28253407 - 28253742
Alignment:
Q  48 aaagataaagagtttagag-tttcgctatttaatctatttgaaacagagcaaagtttacctgtttc-attgcagaatgttttcggcggttaagattattc 145  Q
    |||||||||| |||||||| ||| || |||||||||||||| ||| ||| |||||||||||||||  |||||| ||||||   || |||||| |||||||    
T  28253407 aaagataaagggtttagaggttttgcaatttaatctatttgcaacggagaaaagtttacctgttttgattgcaaaatgttagtggtggttaatattattc 28253506  T
Q  146 gaatcccttctatttatta-ttggatttacgtagcnnnnnnntcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacc 244  Q
    ||||||   |||||||||  ||||| |||| || |       |||||||||| ||||||  |||||||||||| |||| |||||||  |||| |||||||    
T  28253507 gaatcctccctatttatttgttggaattacttaacaatcaagtcttattcaaattttagcattttctatctaattgataagttcgtggggttctactacc 28253606  T
Q  245 taccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgc 342  Q
    ||||||||  ||||||||||||| |||||||||  ||| |||| |||||||| ||||||||||  |||||  |||||||| |||||||| | | |||| |    
T  28253607 taccagctatcaagttgcacctgctgatcacacgggtatgtacatgtggggtcttactctctcaaaggtataggttcatttccctccagatgtaagtttc 28253706  T
Q  343 aacctttacaccagagttcctacgggtttcagtgtt 378  Q
    |||| |||||||| | |||||||| |||| ||||||    
T  28253707 aaccattacaccataattcctacgagttttagtgtt 28253742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 28142442 - 28142804
Alignment:
Q  7 atgcaattcgcgttacttatttgggaataataaaaataaataaa-gataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttac 105  Q
    |||||||| | |||||||||||||||| |||| ||||||||||| ||||  | ||||||||| | || |||||||||||||| ||||||| |||||| ||    
T  28142442 atgcaatttgtgttacttatttgggaacaatataaataaataaaagatatgg-gtttagagtgttgcaatttaatctatttgcaacagagtaaagttcac 28142540  T
Q  106 ctgt-ttcattgcagaatgttttcggcggttaagattatt-cgaatcccttctatttatta-ttggatttacgtagcnnnnnnntcttattcaactttta 202  Q
    |||| || | |||| ||||||  |||| |||| |||| || ||||| |  ||||||||||  ||||| |||| || |       ||||||||| ||||||    
T  28142541 ctgtcttgactgcataatgttagcggcagttatgattttttcgaattctctctatttatttgttggaattacttaacattaaagtcttattcagctttta 28142640  T
Q  203 gtgttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttact 300  Q
    |  ||||||||||||||| |||||| ||  |||||||||||||| ||| |  | |||||||| ||||||||||||| ||| |||| ||  |||  |||||    
T  28142641 gcattttctatctaagtggtgagtttgtgaggttttactacctatcagttttcgagttgcacttgttgatcacacaagtaagtacctgcagggacttact 28142740  T
Q  301 ctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttccta 364  Q
    |||||  || ||  |||||||||||||| |  | |||||||||||| |||||||||||||||||    
T  28142741 ctctcaaagatataggttcattgccctctaattgtcagttgcaaccattacaccagagttccta 28142804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 221 - 378
Target Start/End: Complemental strand, 112431 - 112273
Alignment:
Q  221 atgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggtt 318  Q
    ||||||||||  ||||||||||||||||||||  |||||| |||||| |||||||||  ||| |||| |||||||| |||| ||||||| |||| |||||    
T  112431 atgagttcgtgaggttttactacctaccagctgtcaagttacacctgctgatcacacgggtacgtacatgtggggtcttaccctctcggtggtatgggtt 112332  T
Q  319 cattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    |||| |||||||||| || ||||||||| || |||||||||| |||| ||||||||||||    
T  112331 catttccctccagctgtcggttgcaacc-ttccaccagagtttctacaggtttcagtgtt 112273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 15544129 - 15544484
Alignment:
Q  9 gcaattcgcgttacttatttgggaataataaaaataaataaa-gataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacct 107  Q
    ||||| |||||||||||||||| || ||||||| |||||||| |||||  | |||||||||| || ||||||| | |||| |||| |||||| |||||||    
T  15544129 gcaatccgcgttacttatttggaaacaataaaa-taaataaaagataagta-tttagagttttgcaatttaatttgtttgcaacatagcaaaatttacct 15544226  T
Q  108 gtttc-attgcagaatgttttcggcggttaagattattcgaatcccttctattta-ttattggatttacgtagcnnnnnnntcttattcaa-cttttagt 204  Q
     |||  |||||| ||||||  |||| |||| ||||  ||||||||| |||||||| || || || ||||||| |       | | |||||  |||||| |    
T  15544227 attttgattgcaaaatgttagcggcagttaggattcctcgaatcccctctatttaattgttagaattacgtaacagtcaagtttcattcatgcttttaat 15544326  T
Q  205 gttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacacatgtaggtacgtgt-ggggtgttactc 301  Q
    |||| |||| |||||||| |||||||  |||||||||||||| |||   || || |||||||  |||||||||  |||||||||||| ||||| ||||||    
T  15544327 gtttcctatttaagtgataagttcgtggggttttactacctagcagttgtcgagctgcacctactgatcacacgggtaggtacgtgtgggggtcttactc 15544426  T
Q  302 tctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagt 359  Q
    |||| ||| ||  |||||||| ||||| ||| ||||||||||||| ||| ||| ||||    
T  15544427 tctcagagatataggttcattcccctcaagcaatcagttgcaaccattataccggagt 15544484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 378
Target Start/End: Original strand, 26307879 - 26308058
Alignment:
Q  202 agtgttttctatctaagtgatgagttcgtatggtttt-actacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgtta 298  Q
    |||||||||||||||||||||||||| ||  || ||| |||| | || ||||  |||||||||| || |||||| |   ||||||||||||||||| ||     
T  26307879 agtgttttctatctaagtgatgagttagtgggggtttcactatccactagctgtcaagttgcacatgctgatcataagggtaggtacgtgtggggttttc 26307978  T
Q  299 ctctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    ||||||| |||||| | ||||||| || |||| ||  ||||| ||| | |||||| |||||| |||| ||||||||||||    
T  26307979 ctctctcagaggtatgagttcatttccttccatctgccagttccaatcattacactagagtttctacaggtttcagtgtt 26308058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 29263592 - 29263449
Alignment:
Q  18 gttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacct-gtttcattg 116  Q
    |||||||||||||||| |||||||||||| | ||||| |  ||||||||||| || ||||||| | |||| |||| ||||||||||||||  ||| ||||    
T  29263592 gttacttatttgggaacaataaaaataaa-agagatataaggtttagagttttgcaatttaatatgtttgcaacaaagcaaagtttacctcttttgattg 29263494  T
Q  117 cagaatgttttcggcggttaagattattcgaatcccttctattta 161  Q
     | ||||||  ||| ||||| |||| |||||||||| ||||||||    
T  29263493 tataatgttagcggtggttaggattcttcgaatcccctctattta 29263449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 187 - 378
Target Start/End: Complemental strand, 19904388 - 19904187
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctac------cagct--caagttgcacctgttgatcacacatg 278  Q
    |||||||||||||||||  ||| ||||||||||||||||||| |   |||||||||||||       |||||  |||||||||| || |||||||||  |    
T  19904388 tcttattcaacttttagcattt-ctatctaagtgatgagttcatggagttttactacctattagtatcagctgtcaagttgcacttgctgatcacacggg 19904290  T
Q  279 taggtacgtgtggggtgttactctctcggaggtaa----gggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcag 374  Q
    ||| |||||||||||| ||| |||||| ||| ||     | ||||||| ||||||||||   |||||||||| ||||||||||||||||| |||||| ||    
T  19904289 tagatacgtgtggggtcttattctctcagagatatatatgagttcatttccctccagctgcaagttgcaaccattacaccagagttccta-gggtttaag 19904191  T
Q  375 tgtt 378  Q
    ||||    
T  19904190 tgtt 19904187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 371
Target Start/End: Original strand, 32448252 - 32448407
Alignment:
Q  218 gtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagg 315  Q
    ||||||||||| |  |||||||||||||| || ||  | ||||||||||||||||||||   |||||||| || | ||| |||||||||  ||| || |     
T  32448252 gtgatgagttcatggggttttactacctatcaactgtcgagttgcacctgttgatcacatgggtaggtacatgcgaggtcttactctcttagagatatga 32448351  T
Q  316 gttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggttt 371  Q
    |||| |||||||||| |||  |||||||||| ||||| ||||||||| ||| ||||    
T  32448352 gttctttgccctccaactaatagttgcaaccattacatcagagttcccacgagttt 32448407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 678
Target Start/End: Original strand, 27735487 - 27735593
Alignment:
Q  571 aatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaa 670  Q
    |||||||| |||||| | |||||| | |||||||||||  ||||||| ||| | ||||||||||||||||||  |   ||||||||||||||||||| ||    
T  27735487 aatcttaacacaatctattattaataaaattcacacaaattacaaaa-aagtacaatctcaaaccaaacctaagagtaattaatcaattatactaatgaa 27735585  T
Q  671 cacaattg 678  Q
    ||||||||    
T  27735586 cacaattg 27735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 17830425 - 17830520
Alignment:
Q  253 caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
    ||||||||||||| || ||||||  ||| ||||||||||||| |||||||||  |||||  ||||||||  ||||| |||| |||||| |||||||    
T  17830425 caagttgcacctgctggtcacacgagtacgtacgtgtggggtcttactctcttagaggtttgggttcatcaccctctagctgtcagttccaacctt 17830520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 601 - 676
Target Start/End: Original strand, 29830844 - 29830919
Alignment:
Q  601 tcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaat 676  Q
    ||||||||| |||||||||||  |||||||||||||||||||  |  |||||| ||||||||||| | ||||||||    
T  29830844 tcacacaagttacaaaacaagacaaatctcaaaccaaacctaagagtcattaaacaattatactagtgaacacaat 29830919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 23265234 - 23265270
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaa 46  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  23265234 caattcacgttacttatttgggaacaataaaaataaa 23265270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 1265 - 1004
Alignment:
Q  411 ggggtgaatatcgtttcaaaatttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaaaat-acgacttgtcagattatgcaaggtttaataacaa 508  Q
    |||||||||| | ||| |||| | ||||||||||||| ||||||||||||| || ||| | || | |||||||||  ||||| ||| |||| ||||||||    
T  1265 ggggtgaatagcattttaaaaatcaaatcgagtttgttgcgaaagtgttttaagaaaaggcaatttacgacttgttggattaagcacggttcaataacaa 1166  T
Q  509 tgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaatcttaatacaatccaatattaacacaattcacacaa 608  Q
    ||   |||||| |||  |||||||| |||||| |||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  1165 tggacaaaaattacacaactatgtttaagctatgattaactttgaattgagagattctaagtaatcttaatacaatccaatattaacacaattcacacaa 1066  T
Q  609 gatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaa 670  Q
      ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||    
T  1065 attacaaaacaagcacaatctcaaaccaaacctaaaaacaattaatcaattatactaattaa 1004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 7e-60; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 375 - 678
Target Start/End: Original strand, 9652413 - 9652717
Alignment:
Q  375 tgttggtcagtatgacaatgtaatacgcactaaaaaggggtgaatatcgtttcaaaatttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaaaa 473  Q
    |||||||| |||||||||||||||||||| || |  |||||| ||| | ||| |||| | || |||||||||| ||||||| |||||||| ||| | |      
T  9652413 tgttggtcggtatgacaatgtaatacgcaatagag-ggggtgcatagcattttaaaaatcaattcgagtttgtagcgaaagcgtttttagaaaaggtatt 9652511  T
Q  474 t-acgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaa 572  Q
    | |||||||||  ||||| ||| | || ||||| |||||  |||| | |||||||||  || ||||||| ||||||||||| |||||||||  ||| |||    
T  9652512 ttacgacttgttggattaagcacgattcaataataatgaacaaaactcacaagactacatttaagctaatattaactttgaattgagagattctaagtaa 9652611  T
Q  573 tcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaaca 672  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  9652612 tcttaatacaacccaatattaacacaattcacacaaattacaaaacaagcaaaatctcaaaccaaacctagaaacaattaatcaataatactaattaaca 9652711  T
Q  673 caattg 678  Q
    ||||||    
T  9652712 caattg 9652717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 76 - 378
Target Start/End: Complemental strand, 21912433 - 21912127
Alignment:
Q  76 ttaatctatttgaaacagagcaaagtttacctgtttc-attgcagaatgttttcggcggttaagattattcgaatcccttctatttatta-ttggattta 173  Q
    |||||||||||| ||||||||||||||||| |||||  |||||||||||||  ||||  ||| |||| ||||||| || | ||||||||  ||||| |||    
T  21912433 ttaatctatttgcaacagagcaaagtttacatgttttgattgcagaatgttagcggcatttaggattcttcgaataccctatatttatttgttggaatta 21912334  T
Q  174 cgtagcnnnnnnntcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagctca--agttgcacctgttgatc 271  Q
     ||| |       ||||||||| |||||   |||| ||||  |||||||||||||    || ||||||||||| ||| |    |||||||| ||||||||    
T  21912333 tgtaacagtcgagtcttattcagcttttgaagtttcctattcaagtgatgagttcacggggctttactacctatcagatgttgagttgcacatgttgatc 21912234  T
Q  272 acacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggttt 371  Q
    ||||  ||| ||||||||||||| ||||| |||| ||| || ||||||||| ||||||| || |||||||||||| ||||||| |||||| |||| ||||    
T  21912233 acacgggtatgtacgtgtggggtcttactttctcagagatatgggttcattcccctccatctgtcagttgcaaccattacaccggagttcatacgagttt 21912134  T
Q  372 cagtgtt 378  Q
    |||||||    
T  21912133 cagtgtt 21912127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 9500524 - 9500672
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    |||||||| |||||||||| |||| ||||||| |||||||||| | ||| |||||||||||  | |||||||||||||| |||||||||||| |||| ||    
T  9500524 caattcgcattacttatttaggaacaataaaa-taaataaagagataagggtttagagtttttcaatttaatctatttgcaacagagcaaag-ttacatg 9500621  T
Q  109 tttcattgcagaatgttttcggcggttaagattattcgaatcccttctatt 159  Q
    ||| |||||| ||||||  || |||||| ||||||| ||||| | ||||||    
T  9500622 tttgattgcaaaatgttaccgacggttaggattatttgaatctcctctatt 9500672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 187 - 378
Target Start/End: Complemental strand, 21884996 - 21884803
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggta 284  Q
    ||||||||||||||||  |||| ||||  |||||| |||||     ||||||||| |||| |||||  | ||||||||||| |||||||||| ||| |||    
T  21884996 tcttattcaacttttaaagtttcctattcaagtgacgagtttacggggttttactgcctatcagctgtctagttgcacctgctgatcacacaggtatgta 21884897  T
Q  285 cgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    || ||||||| |||||||||| ||| ||   ||||||| |||||||| | | |||||||||| ||||||  ||| | |||||||||||||||||    
T  21884896 cgcgtggggtcttactctctcagagatattagttcattcccctccagttgttagttgcaaccattacactggaggtgctacgggtttcagtgtt 21884803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 187 - 348
Target Start/End: Original strand, 20174828 - 20174990
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacacatgtaggta 284  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||   |||||||||| ||| | |||| |   ||| |||    
T  20174828 tcttattcagcttttagtgttttttatctaagtgatgagttggtggggttttactacctaccagatgtcaagttgcatctgctaatcata-tggtacgta 20174926  T
Q  285 cgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
     || || ||| |||||| ||| || ||| ||||| ||| ||||||||||||||||| |||||||    
T  20174927 tgtttgaggtcttactccctcagatgtatgggtttattaccctccagctatcagtttcaacctt 20174990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 600 - 678
Target Start/End: Original strand, 19335103 - 19335181
Alignment:
Q  600 ttcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||| ||||||||||| |||||||||||||||| |||  | | ||||||||||||||||||| ||||||||||    
T  19335103 ttcacacaagttacaaaacaaggaaaatctcaaaccaaatctaagaccaattaatcaattatactaatgaacacaattg 19335181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 378
Target Start/End: Complemental strand, 36117398 - 36117205
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctacc--agctcaagttgcacctgttgatcacacatgtaggta 284  Q
    ||||||||| |||||||| |||||||| ||||||||||||||||  | ||||||||| || |  |  || |||||||| |||||||||||   |||| ||    
T  36117398 tcttattcagcttttagtattttctatttaagtgatgagttcgtgggattttactacatatctgatgtcgagttgcacttgttgatcacatgggtagcta 36117299  T
Q  285 cgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    | |||||| | ||| || ||| ||  || | |||||||||||| ||||| |||||||||||  ||||||| ||||||||||  |||| ||||||    
T  36117298 catgtgggatcttattcactcagatatacgagttcattgccctacagctgtcagttgcaactattacaccggagttcctacatgtttaagtgtt 36117205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 13707766 - 13707864
Alignment:
Q  210 ctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacac-atgtaggtacgtgtggggtgttactctctc 305  Q
    |||||||||||||||||||||  |||||||||||||| ||||  ||||||||||| ||||||||||||   |||||||| |||||||  ||||||||||    
T  13707766 ctatctaagtgatgagttcgtggggttttactacctatcagctgtcaagttgcacatgttgatcacacggggtaggtacatgtggggccttactctctc 13707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 18466093 - 18466181
Alignment:
Q  18 gttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacct 107  Q
    |||||||||||||||| ||||||| |||||||||   ||| ||||||||||| || ||||||| |||||| |||||| ||||||||||||    
T  18466093 gttacttatttgggaacaataaaa-taaataaaggataagggtttagagttttgcaatttaatttatttgcaacagatcaaagtttacct 18466181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 5797656 - 5797739
Alignment:
Q  76 ttaatctatttgaaacagagcaaagtttacctg-tttcattgcagaatgttttcggcggttaagattattcgaatcccttctat 158  Q
    |||||||||||| |||||||||||||||||||| ||| |||||||||||||  | ||||||| |||| || ||||||| |||||    
T  5797656 ttaatctatttgcaacagagcaaagtttacctgttttgattgcagaatgttagcagcggttaggattctttgaatcccctctat 5797739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 10937682 - 10937782
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgt 109  Q
    |||||| | ||||||||||| ||| || |||||||||||||||| ||| ||||||||||| |  ||||||| | |||| | |||||||||||||| ||||    
T  10937682 caattcacattacttatttgagaacaacaaaaataaataaagat-aagggtttagagttttgtaatttaatttgtttgcagcagagcaaagtttatctgt 10937780  T
Q  110 tt 111  Q
    ||    
T  10937781 tt 10937782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 16306774 - 16306874
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaa-gagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    ||||| || ||||||||||||||| ||||||| |||||||||| | | | ||||||||||| |  ||||||| |||||  ||||||||||||||||||||    
T  16306774 caatttgcattacttatttgggaacaataaaa-taaataaagagatatgggtttagagttttgaaatttaatatatttacaacagagcaaagtttacctg 16306872  T
Q  109 tt 110  Q
    ||    
T  16306873 tt 16306874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 371
Target Start/End: Complemental strand, 10339530 - 10339344
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacacatgtaggta 284  Q
    ||||||| | ||||| | ||||||||||||||| ||||||||||  ||||||||||||||| ||   ||||||| || ||  | || ||||  |||| |     
T  10339530 tcttatttagcttttcgggttttctatctaagttatgagttcgtgaggttttactacctactagttgtcaagttacatctactaattacacgggtagatg 10339431  T
Q  285 cgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggttt 371  Q
     ||||||||| ||| |||||| |||| | | ||||||||||||| || | | | | |||||| |||||||| |||||||| ||||||    
T  10339430 tgtgtggggtcttaatctctcagaggcatgagttcattgccctctagatgttactggcaaccattacaccaaagttcctatgggttt 10339344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 12356625 - 12356550
Alignment:
Q  603 acacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    ||||||| ||||||| |||  |||||||||||||||| ||  | | ||||||||||||||||||| ||||||||||    
T  12356625 acacaagttacaaaataaggcaaatctcaaaccaaacttaagagcaattaatcaattatactaatgaacacaattg 12356550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 9063108 - 9063221
Alignment:
Q  233 ggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctcca 330  Q
    ||||||||||||||||||||  ||||||||||||  |||||| ||  || ||| | |||||||| ||| ||||| ||||||  ||||||||| |||||      
T  9063108 ggttttactacctaccagctgtcaagttgcacctactgatcatacgggttggtgcatgtggggtcttaatctcttggaggtttgggttcattaccctctg 9063207  T
Q  331 gctatcagttgcaa 344  Q
    ||| ||||||||||    
T  9063208 gctgtcagttgcaa 9063221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 33035754 - 33035808
Alignment:
Q  198 ttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagct 252  Q
    |||||| |||||||||||||||||||| || ||  ||||||||||||||||||||    
T  33035754 ttttagcgttttctatctaagtgatgattttgtggggttttactacctaccagct 33035808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 4901691 - 4901621
Alignment:
Q  235 ttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctc 303  Q
    ||||||||||||||||||  ||||||||||||| |||||||||  ||| |||| |||||| | ||||||||    
T  4901691 ttttactacctaccagctgccaagttgcacctgctgatcacacgagtatgtacatgtgggattttactctc 4901621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 9864345 - 9864245
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    ||||| |||||||||||||| ||| ||||||| || ||||||| | ||| ||||||||||| || ||||| ||| |||| |||| ||||||| |||||||    
T  9864345 caatttgcgttacttatttgagaacaataaaa-tatataaagagataagggtttagagttttgcaatttactctgtttgcaacaaagcaaag-ttacctg 9864248  T
Q  109 ttt 111  Q
    |||    
T  9864247 ttt 9864245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 678
Target Start/End: Original strand, 10203147 - 10203225
Alignment:
Q  600 ttcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||| ||||||| |||  ||||||||||| ||| |||    | ||||||||||||||||||| ||||||||||    
T  10203147 ttcacacaagttacaaaataaggcaaatctcaaacgaaatctaatggcaattaatcaattatactaatgaacacaattg 10203225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 675
Target Start/End: Original strand, 12153238 - 12153288
Alignment:
Q  625 aatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaa 675  Q
    |||||||||||||||||| || | ||||| ||||||||||||| |||||||    
T  12153238 aatctcaaaccaaacctaaaagcaattaaacaattatactaatgaacacaa 12153288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 14755071 - 14754998
Alignment:
Q  92 agagcaaagtttacctgtttc-attgcagaatgttttcggcggttaagattattcgaatcccttctatttatta 164  Q
    |||||||||||| ||| |||  |||||||||||||   ||||||||||||| || ||||||| |||||||||||    
T  14755071 agagcaaagtttccctattttgattgcagaatgttaatggcggttaagattctttgaatcccatctatttatta 14754998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 18449643 - 18449767
Alignment:
Q  38 aaaaataaat-aaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg-tttcattgcagaatgttttcggcggtt 135  Q
    |||||||||| |||||||| | |||| ||||||  | |||||||||||||| |||||| ||| ||||||||| ||| |||||||||| ||  || |||||    
T  18449643 aaaaataaatgaaagataagg-gttttgagtttttcaatttaatctatttgcaacagatcaatgtttacctgttttgattgcagaatattaacgacggtt 18449741  T
Q  136 aagattattcgaatcccttctattta 161  Q
    | |||| |  ||||||| ||||||||    
T  18449742 aggattctctgaatcccctctattta 18449767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 36117552 - 36117472
Alignment:
Q  24 tatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttac 105  Q
    |||||||||| | ||||||||||||||||| | || | |||||||| || ||||||| | |||| |||||| ||||||||||    
T  36117552 tatttgggaacagtaaaaataaataaagatgagga-tgtagagttttgcaatttaatttgtttgcaacagaacaaagtttac 36117472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 18466283 - 18466382
Alignment:
Q  205 gttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactct 302  Q
    ||| ||||| ||||||||||| ||||  |||||||||||||| |||   || ||||||||| | ||||||| || |||||||||||| |||  |||||||    
T  18466283 gttatctatataagtgatgagatcgtggggttttactacctatcagttatcgagttgcacccgctgatcacccaggtaggtacgtgtcgggccttactct 18466382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 7e-60; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 375 - 678
Target Start/End: Original strand, 13523438 - 13523742
Alignment:
Q  375 tgttggtcagtatgacaatgtaatacgcactaaaaaggggtgaatatcgtttcaaaatttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaaaa 473  Q
    |||||||| |||||||||||||||||||| || |  |||||| ||| | ||| |||| | || |||||||||| ||||||| |||||||| ||| | |      
T  13523438 tgttggtcggtatgacaatgtaatacgcaatagag-ggggtgcatagcattttaaaaatcaattcgagtttgtagcgaaagcgtttttagaaaaggtatt 13523536  T
Q  474 t-acgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaa 572  Q
    | |||||||||  ||||| ||| | || ||||| |||||  |||| | |||||||||  || ||||||| ||||||||||| |||||||||  ||| |||    
T  13523537 ttacgacttgttggattaagcacgattcaataataatgaacaaaactcacaagactacatttaagctaatattaactttgaattgagagattctaagtaa 13523636  T
Q  573 tcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaaca 672  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  13523637 tcttaatacaacccaatattaacacaattcacacaaattacaaaacaagcaaaatctcaaaccaaacctagaaacaattaatcaataatactaattaaca 13523736  T
Q  673 caattg 678  Q
    ||||||    
T  13523737 caattg 13523742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 377
Target Start/End: Original strand, 19900687 - 19901023
Alignment:
Q  39 aaaataaataaa-gataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttc-attgcagaatgttttcggcggtta 136  Q
    |||||||||||| ||||| | ||||||||||| || ||||||||| |||| |||| ||||||||||||||||||  |||||| ||||||  ||| |||||    
T  19900687 aaaataaataaaagataagg-gtttagagttttgcaatttaatctgtttgcaacatagcaaagtttacctgttttgattgcataatgttagcggaggtta 19900785  T
Q  137 agattattcgaatcccttctatttatta-ttggatttacgtagcnnnnnnntcttattcaacttttagtgttttctatctaagtgatgagttcgtatggt 235  Q
     |||| |||| ||||| | ||||||||  ||||| |||| || |       ||||||||| |||||||  | |||||| |||| ||||||   ||         
T  19900786 ggattcttcggatcccctatatttatttgttggaattacttaactgtcaagtcttattcagcttttagcatattctatataagggatgagggagt----- 19900880  T
Q  236 tttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagct 333  Q
     |||||||||| |||||  | ||||||||||| |||||||||| |||||||  | ||||||  || |||||  ||| || ||||   || ||||||||||    
T  19900881 -ttactacctatcagctgtcgagttgcacctgctgatcacacaggtaggtagatttggggtcctaatctctgagagatatgggtgtgtttccctccagct 19900979  T
Q  334 atcagttgcaacctttacaccagagttcctacgggtttcagtgt 377  Q
     |||||||||||| |||||||||||||||||||||||| |||||    
T  19900980 gtcagttgcaaccattacaccagagttcctacgggtttaagtgt 19901023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 15049923 - 15049732
Alignment:
Q  188 cttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtac 285  Q
    ||||||||| ||||||||||||||||||| |||| ||||| ||  ||||||||||| ||| |||  |||| ||||||||| |||||||||  | |  |      
T  15049923 cttattcaatttttagtgttttctatctaggtgacgagtttgtggggttttactacttactagctgtcaaattgcacctgctgatcacacgggaacatgg 15049824  T
Q  286 gtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
     |||| ||| ||||||| |  |||||  |||||||| ||||| |||||||||||||||||| || |||||||||| ||| |||||||||||||    
T  15049823 atgtgcggtcttactcttttagaggtgtgggttcatcgccctacagctatcagttgcaacc-ttccaccagagtttctatgggtttcagtgtt 15049732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 378
Target Start/End: Original strand, 15104501 - 15104692
Alignment:
Q  188 cttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtac 285  Q
    ||||||||| ||||||||||||||||||| |||| ||||| ||  ||||||||||| ||| |||  |||| ||||||||| |||||||||  | |  |      
T  15104501 cttattcaatttttagtgttttctatctaggtgacgagtttgtggggttttactacttactagctgtcaaattgcacctgctgatcacacgggaacatgg 15104600  T
Q  286 gtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
     |||| ||| ||||||| |  |||||  |||||||| ||||| |||||||||||||||||| || |||||||||| ||| |||||||||||||    
T  15104601 atgtgcggtcttactcttttagaggtgtgggttcatcgccctacagctatcagttgcaacc-ttccaccagagtttctatgggtttcagtgtt 15104692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 589 - 677
Target Start/End: Original strand, 20323372 - 20323460
Alignment:
Q  589 tattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaatt 677  Q
    |||||| | ||||||||| || ||||||||||| | ||||||||||||||||||  | | |||||||||||||||||||||||||||||    
T  20323372 tattaataaaattcacacgagttacaaaacaagtacaatctcaaaccaaacctaagagcaattaatcaattatactaattaacacaatt 20323460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 1833616 - 1833462
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaat-aaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    |||||||| |||||||||| |||| ||||||||||||| |||||| ||| ||||| |||||||| ||||||||| |||| || || ||||||||| ||||    
T  1833616 caattcgcattacttatttaggaacaataaaaataaataaaagat-aagtgtttaaagtttcgcaatttaatctgtttgtaatagcgcaaagttttcctg 1833518  T
Q  109 -tttcattgcagaatgttttcggcggttaagattattcgaatcccttctatttatt 163  Q
     ||| |||||||||||||  ||||| | | |||| ||| |||| ||| ||||||||    
T  1833517 ttttgattgcagaatgttagcggcgataaggattcttcaaatctcttttatttatt 1833462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 10107306 - 10107448
Alignment:
Q  208 ttctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctc 305  Q
    |||||||||||||||||||||||  |||||||||||||||  ||  |||||||||||||  | |||||||| ||  |||||| | |||| |||||||||     
T  10107306 ttctatctaagtgatgagttcgtggggttttactacctacaggctatcaagttgcacctactaatcacacaggtttgtacgtttagggtcttactctctt 10107405  T
Q  306 ggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
     |||||  |||||| || |||||||| | ||||||| ||||||    
T  10107406 agaggtttgggttcttttccctccaggtgtcagttggaacctt 10107448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 191 - 378
Target Start/End: Complemental strand, 40215167 - 40214978
Alignment:
Q  191 attcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacacatgtaggtacgtg 288  Q
    ||||| |||||||  |||||||| || |||||||||||||  | ||||| ||||||||||   |||||||||| ||| |||||||||| ||| ||| |||    
T  40215167 attcagcttttagcattttctatatatgtgatgagttcgtgggattttaatacctaccagatgtcaagttgcaactgctgatcacacaagtaagtatgtg 40215068  T
Q  289 tggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    |||| | ||||||||||  |  || ||||||||||||||||     |||||| ||||| |||||  |||||| |||||| ||| ||||||    
T  40215067 tgggatcttactctctcaaaattatgggttcattgccctcctttagtcagttacaaccattacataagagtttctacggattttagtgtt 40214978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 22526452 - 22526613
Alignment:
Q  18 gttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgc-tatttaatctatttgaaacagagcaaagtttacctg-tttcatt 115  Q
    ||||||||||||||||  ||||||||||| | |||| ||||||||||||||| ||  | ||||| | |||| |||| | ||||||||||||| ||| |||    
T  22526452 gttacttatttgggaacgataaaaataaa-agagatgaagagtttagagttttgcagagttaatttgtttgcaacaaaacaaagtttacctgttttgatt 22526550  T
Q  116 gcagaatgttttcggcggttaagattattcgaatcccttctattt-attattggatttacgta 177  Q
    ||| ||||||  ||||||||| |||| || ||||||  ||||||| ||| ||||| |||||||    
T  22526551 gcataatgttagcggcggttatgattctttgaatcctctctatttaattgttggaattacgta 22526613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 11094044 - 11094143
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgt 109  Q
    |||||| |||| |||||||| ||| |||| ||||||| |||| ||||| |||||| |||| |  ||||||||| |||||||||||  ||| |||||||||    
T  11094044 caattcacgttgcttatttgagaacaatacaaataaaaaaag-taaag-gtttagggttttgtaatttaatctgtttgaaacagaataaaatttacctgt 11094141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 40215338 - 40215214
Alignment:
Q  9 gcaattcgcgttacttatttgggaataataaaaataaataaagataaagagtt-tagagtttcgctatttaatctatttgaaacagagcaaagtttacct 107  Q
    ||||||| | ||||||||||||||| | | ||||||   ||||||||||||||  ||| ||| || |||| |||| |||| |||||||||| || |||||    
T  40215338 gcaattcacattacttatttgggaacagttaaaata---aaagataaagagttaaagaattttgcaatttgatctgtttgcaacagagcaaggtatacct 40215242  T
Q  108 g-tttcattgcagaatgttttcggcggt 134  Q
    | ||| |||||||||||||  |||||||    
T  40215241 gttttaattgcagaatgttagcggcggt 40215214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 9052753 - 9052908
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaat-aaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacct 107  Q
    |||||| |||||||||||| |||| ||| ||||||||| ||||| | ||||||||| |||||  | ||||||| | |||| || |||| |||| ||| ||    
T  9052753 caattcacgttacttattttggaacaat-aaaataaataaaagagataagagtttatagttttccaatttaatatgtttgcaatagaggaaagattaact 9052851  T
Q  108 g-tttcattgcagaatgttttcggcggttaagattattcgaatcccttctatttatt 163  Q
    | ||| ||| |||||||||   |||||||| |||| || ||||||| ||||||||||    
T  9052852 gttttgattacagaatgttaatggcggttaggattctttgaatcccctctatttatt 9052908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 15050102 - 15050066
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaa 46  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  15050102 caatttgcgttacttatttgggaacaataaaaataaa 15050066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 15104322 - 15104358
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaa 46  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  15104322 caatttgcgttacttatttgggaacaataaaaataaa 15104358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 474 - 678
Target Start/End: Complemental strand, 23140759 - 23140556
Alignment:
Q  474 tacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaat 573  Q
    ||||||||||  ||||| ||| |||| ||||||||||| | ||||| |||| | |||||||||||||| ||||||||||| ||||||||| |||| ||||    
T  23140759 tacgacttgttggattaagcacggttcaataacaatga-acaaaatcacaatattatgttcaagctaaaattaactttgaattgagagattttaagtaat 23140661  T
Q  574 cttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacac 673  Q
    ||||||||||| ||| ||||||||||||||| |||  || |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  23140660 cttaatacaattcaaaattaacacaattcacgcaaattataaaacaagcacaatctcaaaccaaacctagaaacaattaatcacttatactaattaacac 23140561  T
Q  674 aattg 678  Q
    |||||    
T  23140560 aattg 23140556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 474 - 678
Target Start/End: Complemental strand, 23552549 - 23552346
Alignment:
Q  474 tacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaat 573  Q
    ||||||||||  ||||| ||| |||| ||||||||||| | ||||| |||| | |||||||||||||| ||||||||||| ||||||||| |||| ||||    
T  23552549 tacgacttgttggattaagcacggttcaataacaatga-acaaaatcacaatattatgttcaagctaaaattaactttgaattgagagattttaagtaat 23552451  T
Q  574 cttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacac 673  Q
    ||||||||||| ||| ||||||||||||||| |||  || |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  23552450 cttaatacaattcaaaattaacacaattcacgcaaattataaaacaagcacaatctcaaaccaaacctagaaacaattaatcacttatactaattaacac 23552351  T
Q  674 aattg 678  Q
    |||||    
T  23552350 aattg 23552346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 15454978 - 15455084
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacacatgtaggta 284  Q
    ||||||||||| |||||  ||||||||| |||||||||||||||  ||||||||||||||| ||   |||| ||||||||| |||||||||| |||||||    
T  15454978 tcttattcaacctttagctttttctatcgaagtgatgagttcgtggggttttactacctactagatgtcaacttgcacctgctgatcacacaggtaggta 15455077  T
Q  285 cgtgtgg 291  Q
    |||||||    
T  15455078 cgtgtgg 15455084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 30695248 - 30695152
Alignment:
Q  252 tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
    |||||||||||||  |||||||||  ||  || ||| |||||| ||||||||||  ||||  |||||||||||||||||||| ||||||||||||||    
T  30695248 tcaagttgcacctactgatcacacgagtttgttcgtctggggtattactctctcaaaggtttgggttcattgccctccagctgtcagttgcaacctt 30695152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 378
Target Start/End: Original strand, 9239423 - 9239594
Alignment:
Q  209 tctatctaagtgatgagttcgtatggttttactacctaccagctcaag--ttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcg 306  Q
    |||||| |||||||||||||||  ||||||||||| || || ||   |  |||||| || |||||||||  |||||||||  |||||| ||||||||||     
T  9239423 tctatccaagtgatgagttcgtgaggttttactacatatcaactgttgaattgcacttgctgatcacacgagtaggtacgcttggggtcttactctctca 9239522  T
Q  307 gaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    ||| || | ||||||| ||||| |  | ||| ||| |||| ||||||||||||||||||  |||| ||||||    
T  9239523 gagatatgagttcattaccctctaattgtcacttgtaaccattacaccagagttcctacatgtttaagtgtt 9239594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 18932506 - 18932648
Alignment:
Q  208 ttctatctaagtgatgagttcgtatggttttactacctaccagctc--aagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctc 305  Q
    |||| |||||| |||||||||||  ||||||||| ||||||||||   ||| ||||| |  ||||||||   ||  ||| ||||||||| ||||||||||    
T  18932506 ttctctctaagggatgagttcgtggggttttactgcctaccagctgtaaagctgcacatactgatcacatgggtttgtaggtgtggggtcttactctctc 18932605  T
Q  306 ggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
      ||||  ||||||||||||||  |||| ||||||||||||||    
T  18932606 aaaggtttgggttcattgccctatagctgtcagttgcaacctt 18932648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 8502907 - 8502815
Alignment:
Q  284 acgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtg 376  Q
    |||| |||||| |||||||||| ||| |  | |||| || ||||| |||| | |||||||||| ||||||| ||||||||||| |||||||||    
T  8502907 acgtatggggtcttactctctcagagatgtgagttctttcccctctagctttaagttgcaaccattacaccggagttcctacgagtttcagtg 8502815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 28770462 - 28770361
Alignment:
Q  10 caattcgcgttacttatttgggaataa--taaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacct 107  Q
    |||||| || |||||||||||||||||  |||||||||| | ||| |||||||||||||||| || ||||||| |  ||| |||| | ||||||||||||    
T  28770462 caattcacgctacttatttgggaataaaataaaaataaa-agaga-aaagagtttagagttttgcaatttaatttgcttgcaacataacaaagtttacct 28770365  T
Q  108 gttt 111  Q
    ||||    
T  28770364 gttt 28770361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 30900838 - 30900755
Alignment:
Q  39 aaaataaataa-agataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttcattgcagaat 122  Q
    ||||||||||| |||||| | ||||||||||| || |||||||||||||  |||||||||||  | |||||||| ||||||||||    
T  30900838 aaaataaataagagataagg-gtttagagttttgcaatttaatctatttacaacagagcaaaagtcacctgtttgattgcagaat 30900755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 9239234 - 9239364
Alignment:
Q  18 gttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttcattgc 117  Q
    ||||||||||| |||| ||||||||||   |||||||||| |||||||||||  | ||||||||| |||| |||| ||   |||||||| |||| ||| |    
T  9239234 gttacttatttaggaacaataaaaata---aaagataaag-gtttagagtttaccaatttaatctgtttgcaacaaagtggagtttaccagtttgattac 9239329  T
Q  118 agaatgttttcggcggttaagattattcgaatccc 152  Q
    | ||||||  |||| |||| |||| || |||||||    
T  9239330 aaaatgttaacggcagttaggattctttgaatccc 9239364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 474 - 678
Target Start/End: Original strand, 34689 - 34892
Alignment:
Q  474 tacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaat 573  Q
    ||||||||||  ||||| ||| |||| |||||||||||  |||||| ||||||| ||||| ||||||||||||||||||| ||||||| |  ||| ||||    
T  34689 tacgacttgttggattaagcacggttcaataacaatgaacaaaaatcacaagaccatgtttaagctaagattaactttgaattgagagtttctaagtaat 34788  T
Q  574 cttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacac 673  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||| ||||||| ||||||||||||||| | |||||||    
T  34789 cttaacacaatccaatattaacacaattcacacaaattacaaaacaagcacaatctc-aaccaaacttagaaacaattaatcaattatacgagttaacac 34887  T
Q  674 aattg 678  Q
    |||||    
T  34888 aattg 34892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 24188251 - 24187875
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgt 109  Q
    |||| ||||||| ||||||||||| ||||||||||||||| ||||||| ||||| ||||| || ||||||||| |||| |||||||||||||||| ||||    
T  24188251 caatccgcgttatttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctgtttgcaacagagcaaagtttatctgt 24188152  T
Q  110 ttc-attgcagaatgttttcggcggttaagattattcgaatcccttctatttatta-ttggatttacgtagcnnnnnnntcttattcaacttttagtgtt 207  Q
    ||  |||| | ||||||  ||   |||| |||| || ||||||| ||||||||||  ||| | | || || |       || |||||  |||||||||||    
T  24188151 tttgattgaaaaatgttagcgatagttaggattttttgaatcccctctatttatttgttgaaatgacttaacaatcaagtcatattcggcttttagtgtt 24188052  T
Q  208 ttct-----atctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttact 300  Q
    || |     ||| ||||||||||||  |  |||||||||||||| |||||  | ||||||||||| |||||||||  |||||||| |||| ||| |||||    
T  24188051 tttttttttatccaagtgatgagtttattgggttttactacctatcagctgtcgagttgcacctgctgatcacacgggtaggtacatgtgaggtcttact 24187952  T
Q  301 ctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgt 377  Q
    ||||| |||||| | |||||||  |||||| || |||||||||||| |||||||||||||||||| |||||||||||    
T  24187951 ctctcagaggtatgagttcattctcctccaactttcagttgcaaccattacaccagagttcctacaggtttcagtgt 24187875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 433 - 678
Target Start/End: Original strand, 24454085 - 24454315
Alignment:
Q  433 ttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaaaat-acgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactat 530  Q
    |||||| |||||||| ||||||| |||||||||||| | |||| ||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||    
T  24454085 ttaaattgagtttgtagcgaaagcgtttttagtaaaggtaaattacgacttatcggattatgcaaggtttaataaccatgataataaataacaagactat 24454184  T
Q  531 gttcaagctaagattaactttgacttgagagatcttaattaatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctc 630  Q
     ||||| ||||||| || ||||| |||||||||  ||| |||||                ||||||||||||||| ||| ||||||||||||| || |||    
T  24454185 attcaaactaagatcaagtttgaattgagagattctaagtaatc----------------ttaacacaattcacaaaagttacaaaacaagcacaa-ctc 24454267  T
Q  631 aaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||||    
T  24454268 aaaccaaacctaaaaacaattaatcaatgatactaattaacacaattg 24454315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 378
Target Start/End: Complemental strand, 23088290 - 23087984
Alignment:
Q  74 atttaatctatttgaaacagagcaaagtttacctgtttc-attgcagaatgttttcggcggttaagattattcgaatcccttctatttattattggattt 172  Q
    ||||||| | |||| || ||||||||||||||||||||  |||| ||||||||  |||| |||| |||| ||| |||||| | |||||||| ||||| ||    
T  23088290 atttaatttgtttgcaatagagcaaagtttacctgttttgattgtagaatgttagcggcagttaggattcttcaaatcccctatatttattgttggaatt 23088191  T
Q  173 acgtagcnnnnnnntcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgat 270  Q
    | ||| |       |||||||||||||||   |||| ||||  ||||||||||||| |  ||||||||||| || |||||  |  |||||||||| ||||    
T  23088190 atgtaacagtcaagtcttattcaacttttgacgtttcctattcaagtgatgagttcatggggttttactacttatcagctatcgtgttgcacctgctgat 23088091  T
Q  271 cacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtt 370  Q
    |||||  ||||||||||||||| | |||||||||| ||| || | ||||||| |||||||  | |||||| ||||| ||||| | ||||||| ||| |||    
T  23088090 cacacgggtaggtacgtgtggg-tcttactctctcagagatatgtgttcattcccctccaattgtcagttacaaccattacatcggagttcccacgagtt 23087992  T
Q  371 tcagtgtt 378  Q
    ||||||||    
T  23087991 tcagtgtt 23087984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 28586042 - 28585691
Alignment:
Q  17 cgttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttc-att 115  Q
    |||||||||||||| ||  ||||||  || ||||||||| | ||||||| ||| || ||||||| | |||  ||||||| |||||||| ||||||  |||    
T  28586042 cgttacttatttggaaactataaaataaattaaagataagg-gtttagatttttgcaatttaatatgtttacaacagagaaaagtttatctgttttgatt 28585944  T
Q  116 gcagaatgttttcggcggttaagattattcgaatcccttctattta-ttattggatttacgtagcnnnnnnntcttattcaactt-ttagt-gttttcta 212  Q
    | ||||||||  ||||||||| |||| ||| |||||| |||||||| || ||||| ||||||| |       |||||||||  || ||| | ||| ||||    
T  28585943 gtagaatgttagcggcggttaggattcttcaaatcccctctatttaattgttggaattacgtaaccgtcaagtcttattcatgttattaatcgttatcta 28585844  T
Q  213 tctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggagg 310  Q
    ||||||| ||||||| ||  |||||||||||||| |||||  | ||||| ||||||||||||| |  ||| ||||||||||||| ||||||| || |||     
T  28585843 tctaagtaatgagtttgtgaggttttactacctatcagctgtcgagttgaacctgttgatcacgctggtaagtacgtgtggggtcttactctatcagaga 28585744  T
Q  311 taagggttcattgccctccagctatcagttgcaacctttacaccagagttcct 363  Q
    || ||||||||| |||||| ||| ||| |||||||  ||||||  ||||||||    
T  28585743 tatgggttcattcccctcctgctgtcaattgcaactattacactggagttcct 28585691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 10503853 - 10504019
Alignment:
Q  199 tttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgt 296  Q
    ||||||||||||||||||||||||||||| ||  | ||||||||| ||||| ||  |||||||||||||  ||||||||  ||||||||||||||||| |    
T  10503853 tttagtgttttctatctaagtgatgagttagtgggtttttactacataccaactatcaagttgcacctgcagatcacacgagtaggtacgtgtggggtat 10503952  T
Q  297 tactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctac 365  Q
    ||  ||||| |||||| | ||||||| ||||| |||  || |||| |||| |||||| |||||||||||    
T  10503953 ta--ctctcagaggtatgagttcattaccctctagccgtctgttggaaccattacactagagttcctac 10504019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 20722006 - 20721917
Alignment:
Q  188 cttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacac 275  Q
    ||||||||| |||||| ||||||||||||||||||||||||||  | |||||| |||||||||   |||||||| || ||||||||||||    
T  20722006 cttattcaatttttagcgttttctatctaagtgatgagttcgtgggattttaccacctaccagatgtcaagttggacatgttgatcacac 20721917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 15613925 - 15613828
Alignment:
Q  252 tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaagggttca-ttgccctccagctatcagttgcaacctt 348  Q
    |||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||  ||||  |||||||    ||||| |||||||||||||||||||    
T  15613925 tcaagttgcacctgctgatcacacgtgtatgtacgtgtggggttttactctctcaaaggtttgggttcaccccccctctagctatcagttgcaacctt 15613828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 348
Target Start/End: Original strand, 9386325 - 9386485
Alignment:
Q  189 ttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtacg 286  Q
    |||||||  |||||| || ||||||||||||||||| ||| |  |||||||||||||||||||  |||||||||| ||  |||||||||| ||  |||||    
T  9386325 ttattcagtttttagcgtcttctatctaagtgatgaattcatggggttttactacctaccagctttcaagttgcatctactgatcacacaagtttgtacg 9386424  T
Q  287 tgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
    ||| | ||  ||||||||| ||| |  ||||||||| |||| || || | ||||||||||||    
T  9386425 tgt-gtgtcctactctctcagagttctgggttcatttcccttcaacttttagttgcaacctt 9386485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 678
Target Start/End: Complemental strand, 25931347 - 25931269
Alignment:
Q  600 ttcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||| |||||||||||   |||| |||||||||| |   | | ||||||||||||||||||| ||||||||||    
T  25931347 ttcacacaagttacaaaacaagttcaatcccaaaccaaacatgagagcaattaatcaattatactaatgaacacaattg 25931269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 378 - 639
Target Start/End: Original strand, 14888854 - 14889117
Alignment:
Q  378 tggtcagtatgacaatgtaatacgcactaaaaaggggtgaatatcgtttcaaaatttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaaaat-a 475  Q
    ||||| ||||| ||||||||||| ||| | |  ||| |||||  | ||| |||||||||||  ||||||| ||||||| |||||||||||| |  ||| |    
T  14888854 tggtcggtatggcaatgtaatacacaccatagggggctgaattgcattttaaaatttaaatttagtttgtagcgaaagcgtttttagtaaaggtgaatta 14888953  T
Q  476 cgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagctaagattaactttgacttgagagatcttaattaatct 575  Q
    |||| | ||||||||||||||||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||  ||| || |||    
T  14888954 cgacgtatcagattatgcaaggtccaataacaatgataaaaaataacaagattatgtttaagctaagattaactttgaattcagagattctaagtagtct 14889053  T
Q  576 taatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaac 639  Q
    |||||||||  |||||||| | |||  ||||| | |||||||||| || |||||||||||||||    
T  14889054 taatacaataaaatattaatagaatctacacatgttacaaaacaaccacaatctcaaaccaaac 14889117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 378
Target Start/End: Complemental strand, 23056118 - 23055817
Alignment:
Q  74 atttaatctatttgaaacagagcaaagtttacctgtttc-attgcagaatgttttcggcggttaagattattcgaatcccttctatttatta-ttggatt 171  Q
    |||| ||||||||  ||||||||||  |||||||||||  || | ||||||||  ||||||||| |||| |||||||||||| | ||||||  ||||| |    
T  23056118 atttgatctatttacaacagagcaagatttacctgttttgatggtagaatgttagcggcggttaggattcttcgaatcccttttttttatttgttggaat 23056019  T
Q  172 tacgtagcnnnnnnntcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagctcaagttgcacctgttgatc 271  Q
    ||| || |       ||||||||||||||||  |||||||||||||||||||||||| ||  ||||||||||  | | | |||||||||| ||| | |||    
T  23056018 tacttaacagtcaagtcttattcaacttttaacgttttctatctaagtgatgagttcttagagttttactac--agctg-tcaagttgcatctgctaatc 23055922  T
Q  272 acacatgtaggtacgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggttt 371  Q
    ||||  |||  || |||| |||| |||||||||| ||||||   ||||||||| |||||||| |||||||||| | || |  ||||||| ||||||||||    
T  23055921 acacgggtacatatgtgt-gggtcttactctctcagaggtatcagttcattgctctccagctgtcagttgcaa-cattccctcagagtttctacgggttt 23055824  T
Q  372 cagtgtt 378  Q
    |||||||    
T  23055823 cagtgtt 23055817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 20397670 - 20397780
Alignment:
Q  15 cgcgttacttatttgggaataataaaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttca 113  Q
    ||||||||||||||||||| ||||||| |||||||||| | ||  ||||||||||| || ||||||| | |||| ||||||||||| ||||||||||| |    
T  20397670 cgcgttacttatttgggaacaataaaa-taaataaagagataatggtttagagttttgcaatttaatttgtttgcaacagagcaaaatttacctgtttta 20397768  T
Q  114 ttgcagaatgtt 125  Q
    ||||||||||||    
T  20397769 ttgcagaatgtt 20397780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 21074366 - 21074301
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagct 252  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||  | ||||||||||||||||||    
T  21074366 tcttattcaacttttagcgttttctatctaaatgatgagttcgtgggattttactacctaccagct 21074301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 821525 - 821417
Alignment:
Q  18 gttacttatttgggaataataaaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttcattg 116  Q
    |||||||||||||||| ||   || |||||||||| | || ||||||||||||  | ||||||| | |||| ||||||| ||||||||||||||| ||||    
T  821525 gttacttatttgggaacaaattaagtaaataaagagataaaagtttagagtttttcaatttaatatgtttgcaacagagaaaagtttacctgtttaattg 821426  T
Q  117 cagaatgtt 125  Q
    |||||||||    
T  821425 cagaatgtt 821417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 598 - 678
Target Start/End: Complemental strand, 7654253 - 7654173
Alignment:
Q  598 aattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||||| || |||||||| | ||| ||||||||||||||  | | ||||||||||||||||||| ||||||||||    
T  7654253 aattcacacaagttataaaacaagtataatttcaaaccaaacctaagagcaattaatcaattatactaatgaacacaattg 7654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 8557148 - 8556995
Alignment:
Q  10 caattcgcgttacttatttgggaataata-aaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacct- 107  Q
    ||||| |||||||||||||||||| || | |||||||| || ||||| | ||||||||||| || || |||| | ||||||||| || |||||||||||     
T  8557148 caatttgcgttacttatttgggaacaaaataaaataaa-aaggataagg-gtttagagttttgcaatataatatgtttgaaacatagtaaagtttacctc 8557051  T
Q  108 gtttcattgcagaatgttttcggcggttaagattattcgaatcccttctatttatt 163  Q
     ||| |||||||||||||  || | |||| |||| || ||||| | ||||||||||    
T  8557050 ttttgattgcagaatgttaacgacagttatgattctttgaatctcctctatttatt 8556995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 13908207 - 13908129
Alignment:
Q  74 atttaatctatttgaaacagagcaaagtttacctgtttcattgcagaatgttttcggcggttaagattattcgaatccc 152  Q
    ||||||||||||||  |||||||||  ||||||||||| | || ||||||||   |||||||| ||||||| |||||||    
T  13908207 atttaatctatttgctacagagcaagttttacctgtttgaatgtagaatgttagtggcggttaggattatttgaatccc 13908129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 20885471 - 20885539
Alignment:
Q  209 tctatctaagtgatgagttcgtatggttttactacctaccag--ctcaagttgcacctgttgatcacac 275  Q
    |||||||||||| |||||||||  | |||||||||||| |||   ||||||||||||||||||| ||||    
T  20885471 tctatctaagtggtgagttcgtgggattttactacctatcagttgtcaagttgcacctgttgatgacac 20885539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 28729115 - 28729152
Alignment:
Q  209 tctatctaagtgatgagttcgtatggttttactaccta 246  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  28729115 tctatctaagtgatgagttcgttaggttttactaccta 28729152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 570 - 678
Target Start/End: Original strand, 17199425 - 17199533
Alignment:
Q  570 taatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaatta 669  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  17199425 taatcttaatataatccaatattaacacaattcacacaaattacaaaacaagcacaatctcaagccaaacctagaaacaattaatcaattatactaatta 17199524  T
Q  670 acacaattg 678  Q
    |||||||||    
T  17199525 acacaattg 17199533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 6501571 - 6501420
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg- 108  Q
    |||||| || |||||||||||||  ||||||| ||||||||||| ||| ||||||||||| || ||||||||||||||||||| ||||||||||| |||     
T  6501571 caattcacgatacttatttgggagcaataaaa-taaataaagatgaagggtttagagttttgcaatttaatctatttgaaacatagcaaagtttagctgt 6501473  T
Q  109 tttcattgcagaatgttttcggcggttaagattattcgaatcccttctattta 161  Q
    ||| |||||||||||||  ||||||||| |||| |||||||||| ||||||||    
T  6501472 tttaattgcagaatgttagcggcggttatgattcttcgaatcccctctattta 6501420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 474 - 678
Target Start/End: Complemental strand, 15546762 - 15546558
Alignment:
Q  474 tacgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaagc-taagattaactttgacttgagagatcttaattaa 572  Q
    ||||||||||  |||||||||| ||||| | || |||| ||||| ||| |||||||||   |||  ||||||||||||||| ||| |||||  ||| |||    
T  15546762 tacgacttgttggattatgcaaagtttagtgactatgacaaaaa-taataagactatgcataaggataagattaactttgaattgggagattctaagtaa 15546664  T
Q  573 tcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaaca 672  Q
    |||||| |||||  ||||||||   |||||||||||| ||||||||||| | ||||| ||||||||||||  ||| ||||||||||||||||||  ||||    
T  15546663 tcttaacacaatttaatattaatgaaattcacacaagttacaaaacaagtataatcttaaaccaaacctaagaacaattaatcaattatactaaagaaca 15546564  T
Q  673 caattg 678  Q
    ||||||    
T  15546563 caattg 15546558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 570 - 674
Target Start/End: Original strand, 29983622 - 29983726
Alignment:
Q  570 taatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaatta 669  Q
    ||||||||| |||||| |||||||| | |||||||||||| ||||||||||| | ||||||||||||||||||  | | |||||||||||||||| || |    
T  29983622 taatcttaacacaatctaatattaataaaattcacacaagttacaaaacaagtacaatctcaaaccaaacctaagagcaattaatcaattatactgatga 29983721  T
Q  670 acaca 674  Q
    |||||    
T  29983722 acaca 29983726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 209 - 365
Target Start/End: Original strand, 15053125 - 15053282
Alignment:
Q  209 tctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcg 306  Q
    ||||||||||||||||||||||   ||||||||||||||||||  |||||||||| || |||||||||   ||  |||||||| | || ||||||||||     
T  15053125 tctatctaagtgatgagttcgtgatgttttactacctaccagctatcaagttgcaactattgatcacatgggtttgtacgtgtagagtcttactctctca 15053224  T
Q  307 gaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctac 365  Q
    |||||  | |||||||| |||||| || |||||||||| | ||||||| ||||| ||||    
T  15053225 gaggtttgagttcattgacctccacctgtcagttgcaatc-ttacaccggagtttctac 15053282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 539 - 678
Target Start/End: Original strand, 20063877 - 20064016
Alignment:
Q  539 taagattaactttgacttgagagatcttaattaatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaa 638  Q
    ||||||||||||||| |||||||||  ||| |||||| |  |||||| ||||||||   |||||||| ||| |||||||||||   ||||||||||||||    
T  20063877 taagattaactttgaattgagagattctaagtaatctaagcacaatctaatattaatgaaattcacataagttacaaaacaagttcaatctcaaaccaaa 20063976  T
Q  639 cctagaaaccattaatcaattatactaattaacacaattg 678  Q
     |||  | | |||||||||||||||| || ||||||||||    
T  20063977 tctaatagcaattaatcaattatacttatgaacacaattg 20064016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 348
Target Start/End: Complemental strand, 10064394 - 10064260
Alignment:
Q  216 aagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcggaggtaa 313  Q
    ||||||||||||| |  | ||||||||| |||||||  ||||||| |||||  |||||||||  ||  ||||||||||||| || ||||||| |||||      
T  10064394 aagtgatgagttcatgggattttactacataccagccatcaagttacacctactgatcacacgggtttgtacgtgtggggtcttgctctctcagaggttt 10064295  T
Q  314 gggttcattgccctccagctatcagttgcaacctt 348  Q
    ||||||||| ||||| |||| ||||||||||||||    
T  10064294 gggttcatttccctctagctgtcagttgcaacctt 10064260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 24267801 - 24267651
Alignment:
Q  10 caattcgcgttacttatttgggaataata-aaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    |||||| |||||||||||||||| ||| | |||||||| ||||| || | ||||||||||| || ||||||| | |||| ||||||||||| ||||| ||    
T  24267801 caattcacgttacttatttgggattaaaataaaataaaaaaagacaagg-gtttagagttttgcaatttaatatgtttgcaacagagcaaaatttacttg 24267703  T
Q  109 -tttcattgcagaatgttttcggcggttaagattattcgaatcccttctatt 159  Q
     ||| |||||||||||||  || |||||| |||| || ||||||| ||||||    
T  24267702 ttttgattgcagaatgttagcgacggttaggattctttgaatcccctctatt 24267651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 678
Target Start/End: Complemental strand, 13359298 - 13359191
Alignment:
Q  571 aatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaa 670  Q
    |||||||| | |||| |||||||| | | |||||||||| ||||||||||| | |||||||||| ||||||| || | |||||||||| ||| |||  ||    
T  13359298 aatcttaacaaaatctaatattaataaatttcacacaagttacaaaacaagtacaatctcaaactaaacctaaaagcaattaatcaatcatattaaagaa 13359199  T
Q  671 cacaattg 678  Q
    ||||||||    
T  13359198 cacaattg 13359191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 678
Target Start/End: Original strand, 17316967 - 17317045
Alignment:
Q  600 ttcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    |||||||||| ||||||||||| | ||||||||||||||||||  | | || |||||||||||| ||| | ||||||||    
T  17316967 ttcacacaagttacaaaacaagtacaatctcaaaccaaacctaagagcaatcaatcaattatacaaatgagcacaattg 17317045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 26810156 - 26810223
Alignment:
Q  209 tctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcaca 274  Q
    |||||||||||||||||||| |  |||||||||||||| | ||  ||||||| |||||||||||||||    
T  26810156 tctatctaagtgatgagttcatggggttttactacctatcggctgtcaagttacacctgttgatcaca 26810223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 26540975 - 26541015
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaa 50  Q
    ||||| |||||||||||||||||  ||||||||||||||||    
T  26540975 caatttgcgttacttatttgggagcaataaaaataaataaa 26541015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 13748 - 13557
Alignment:
Q  188 cttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtac 285  Q
    ||||||||| ||||||||||||| ||||| |||||||||| ||  |||||||||||||||||||  |||||||||||||| |||||||||  | |  |||    
T  13748 cttattcaatttttagtgttttccatctaggtgatgagtttgtggggttttactacctaccagctgtcaagttgcacctgatgatcacacgagaacatac 13649  T
Q  286 gtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
     |||| ||| |||||||||  |||||  |||||||| |||||||||||||| ||||||||| ||||||  ||||| ||| |||||||||||||    
T  13648 atgtgcggtcttactctcttagaggtgtgggttcatcgccctccagctatcggttgcaacc-ttacactggagtttctatgggtttcagtgtt 13557  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 24119599 - 24119435
Alignment:
Q  187 tcttattcaacttttagtgttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggta 284  Q
    ||||||||||||||||| |||||||||||||||||||||||| |  ||||||||||| ||  ||||  ||||||||||||| | |||||||| ||| |||    
T  24119599 tcttattcaacttttagcgttttctatctaagtgatgagttcatcgggttttactacttaatagctgtcaagttgcacctgctaatcacacaggtatgta 24119500  T
Q  285 cgtgtggggtgttactctctcggaggtaagggttcattgccctccagctatcagttgcaaccttt 349  Q
    |||||||||| ||||||||||  ||||| ||||||||| ||||||| ||  || |||||||||||    
T  24119499 cgtgtggggtcttactctctcaaaggtatgggttcatttccctccaccttccaattgcaaccttt 24119435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 15238879 - 15239031
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    |||||||||||||||||| ||||  ||||||| |||||||||| | ||| ||||| ||||| || ||||||||| |||| |||| ||||||||| |||||    
T  15238879 caattcgcgttacttattagggatcaataaaa-taaataaagagataagggtttatagttttgcaatttaatctgtttgcaacatagcaaagtt-acctg 15238976  T
Q  109 tttcattgcagaatgttttcggcggttaagattattcgaatcccttctatttatt 163  Q
    ||| |||||||||||||   |||||||| |||| || ||||||| ||||||||||    
T  15238977 tttgattgcagaatgttcgaggcggttaggattctttgaatcccctctatttatt 15239031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 373 - 666
Target Start/End: Original strand, 16647261 - 16647554
Alignment:
Q  373 agtgttggtcagtatgacaatgtaatacgcactaaaaaggggtgaatatcgtttcaaaatttaaatcgagtttgt-gcgaaagtgtttttagtaaaagaa 471  Q
    ||||||||||  |||||||| ||||||| | ||| |  |||||||||| ||||| |||| || | | |||||||| |||||| ||||||| ||||| |      
T  16647261 agtgttggtcgatatgacaaggtaatactcgctagagcggggtgaatagcgtttaaaaaattta-tagagtttgtagcgaaaatgttttttgtaaaggtg 16647359  T
Q  472 aat-acgacttgtcagattatgcaaggtttaataacaatgataaaaaataacaagactatgttcaa-gctaagattaactttgacttgagagatcttaat 569  Q
    ||| | |||||||| ||||||||||||||  || || |||| ||| | ||| |||||||||  ||| | ||||||||| ||||| |||||||||   ||     
T  16647360 aattatgacttgtcggattatgcaaggttcgatgactatgacaaata-taataagactatgcacaaagataagattaa-tttgaattgagagattcaaag 16647457  T
Q  570 taatcttaatacaatccaatattaacacaattcacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaa 666  Q
    ||||| ||| |||||| ||||||||   | |||||||||| ||||||||||| | |||||||||||||  |||  ||| ||||||||||||| ||||    
T  16647458 taatcctaacacaatctaatattaatgaatttcacacaagttacaaaacaagtacaatctcaaaccaacactaagaacaattaatcaattatgctaa 16647554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 5052941 - 5052803
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgt 109  Q
    |||||| || |||||||||||||| || | |||||||||| ||||| | ||||| ||||| || ||||||||| |||| |||||||||| |||||| |||    
T  5052941 caattcacgctacttatttgggaacaaaataaataaataa-gataagg-gtttacagttt-gcaatttaatctgtttgcaacagagcaa-gtttacttgt 5052846  T
Q  110 ttcattgcagaatgttttcggcggttaagattattcgaatccc 152  Q
    || |||||||||||||  |||||||||  || |||||||||||    
T  5052845 ttgattgcagaatgttagcggcggttagaatcattcgaatccc 5052803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 28847198 - 28847371
Alignment:
Q  206 ttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctc 303  Q
    |||||||| |||||||||||||  |  ||||||||||||||  ||||  ||| |||||| || ||||||||    || |||||||| | || ||||||||    
T  28847198 ttttctatataagtgatgagtttatggggttttactacctaaaagctgtcaaattgcacttgctgatcacatgaatacgtacgtgttgtgtcttactctc 28847297  T
Q  304 tcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
    ||||||||| | |||||||  |||| |||| ||| |||| ||| || |||||||||| |||| ||||||||||||    
T  28847298 tcggaggtatgtgttcattttcctctagctgtcaattgccacc-ttccaccagagtttctacaggtttcagtgtt 28847371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 17972458 - 17972611
Alignment:
Q  211 tatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctcgga 308  Q
    ||||||||||||||||||||  ||||||||| | |||||||  |||||||||||||  | |||||||  |    ||| |||||| | |||||||||| ||    
T  17972458 tatctaagtgatgagttcgtgaggttttactgcttaccagctgtcaagttgcacctacttatcacacgagattttacatgtgggattttactctctcaga 17972557  T
Q  309 ggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctac 365  Q
    ||| | |||||||| |||||||||| |||||| |||||  |||||||||||| ||||    
T  17972558 ggtca-ggttcattcccctccagct-tcagttacaacc-atacaccagagtttctac 17972611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 15065176 - 15065108
Alignment:
Q  209 tctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacac 275  Q
    |||||||||||||||||||| | |||||||||||| ||  ||||  ||||||||||||| | |||||||    
T  15065176 tctatctaagtgatgagttcatgtggttttactacttattagctgccaagttgcacctgcttatcacac 15065108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 17965189 - 17965265
Alignment:
Q  76 ttaatctatttgaaacagagcaaagtttacctg-tttcattgcagaatgttttcggcggttaagattattcgaatcc 151  Q
    |||||||||||| || ||||||||||||| ||| ||| |||||||||||||   ||||||| ||||| ||| |||||    
T  17965189 ttaatctatttgcaatagagcaaagtttatctgttttgattgcagaatgttaggggcggttgagattcttcaaatcc 17965265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 205 - 378
Target Start/End: Original strand, 2908 - 3082
Alignment:
Q  205 gttttctatctaagtgatgagttcgtatggttttactacctaccagct--caagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactct 302  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| || |  |||| ||| | |  |||||||||||||  ||||||||||||| |||||||    
T  2908 gttttctatctaagtgatgagtttgtggggttttactacctacaagatgtcaaggtgcgcatactgatcacacatgtttgtacgtgtggggtcttactct 3007  T
Q  303 ctcggaggtaagggttcattgccctccagctatcagttgcaacctttacaccagagttcctacgggtttcagtgtt 378  Q
     || |||||  ||||| ||| |||||||||| |||||||||| | || ||| |||||| ||||  |||||||||||    
T  3008 gtcagaggtttgggttgatttccctccagctgtcagttgcaatc-ttccactagagtttctacatgtttcagtgtt 3082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 19190 - 19344
Alignment:
Q  10 caattcgcgttacttatttgggaataataaaaataaataaagataaaga-gtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctg 108  Q
    |||||||||||| ||||||| ||| || | |||||||||| |||| | | |||||||||||  | ||||||| | |||| |||| |||||||||||| ||    
T  19190 caattcgcgttaattatttgagaacaaaataaataaataaggatatacaagtttagagtttttcaatttaatgtgtttgcaacaaagcaaagtttacatg 19289  T
Q  109 tttcattgcagaatgttttcggcggttaagattattcgaatcccttctatttatt 163  Q
    ||| |||||| ||||||  ||||||||| |||| || ||||||| ||||||||||    
T  19290 tttgattgcaaaatgttagcggcggttatgattctttgaatcccctctatttatt 19344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 223023 - 222898
Alignment:
Q  39 aaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttcattgcagaatgttttcggcggttaa 137  Q
    |||||||||||| ||| ||| ||||||||||| || ||||||||| |||| || ||| |||||||||| ||||| |||||||||||||  |||||||||     
T  223023 aaaataaataaatatataagggtttagagttttgcaatttaatctgtttgcaatagaacaaagtttacatgtttgattgcagaatgttagcggcggttat 222924  T
Q  138 gattattcgaatcccttctatttatt 163  Q
    |||| || ||| | | ||||||||||    
T  222923 gattctttgaacctcctctatttatt 222898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 18729 - 18605
Alignment:
Q  40 aaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtttacctgtttcattgcagaatgttttcggcggttaag 138  Q
    ||||||||||| ||| ||| ||||||||||| || ||||||||| |||| |||||| |||||||||| ||||| |||||||||||||  ||||| ||| |    
T  18729 aaataaataaatatataagggtttagagttttgcaatttaatctgtttgcaacagaacaaagtttacatgtttgattgcagaatgttagcggcgattatg 18630  T
Q  139 attattcgaatcccttctatttatt 163  Q
    ||| || ||| ||  ||||||||||    
T  18629 attctttgaacccactctatttatt 18605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 15442 - 15344
Alignment:
Q  54 aaagagtttagagtttcgctat-ttaatctatttgaaacagagcaaagtttacctg-tttcattgcagaatgttttcggcggttaagattattcgaatc 150  Q
    ||||||||||||||||||| |  ||||||| |||| |||||||| ||||||||||| ||| |||||||||||||  || |||||| |||| ||||||||    
T  15442 aaagagtttagagtttcgcaaagttaatctgtttgcaacagagcgaagtttacctgttttgattgcagaatgttagcgacggttaggattcttcgaatc 15344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 22509 - 22651
Alignment:
Q  208 ttctatctaagtgatgagttcgtatggttttactacctaccagc--tcaagttgcacctgttgatcacacatgtaggtacgtgtggggtgttactctctc 305  Q
    |||||||||||||||||||||||  | ||||||||||||||| |  |||| ||||||||  | |||||||  |   ||||||||||||| ||| | ||||    
T  22509 ttctatctaagtgatgagttcgtgggattttactacctaccaactgtcaaattgcacctactaatcacacgagattgtacgtgtggggtcttaatatctc 22608  T
Q  306 ggaggtaagggttcattgccctccagctatcagttgcaacctt 348  Q
     |||||  |||||||| |||  ||| ||||||||| |||||||    
T  22609 agaggtttgggttcatcgcctcccaactatcagttacaacctt 22651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 1841 - 1905
Alignment:
Q  39 aaaataaataaagata-aagagtttagagtttcgctatttaatctatttgaaacagagcaaagtt 102  Q
    |||||||||||||| | ||| ||||||||||| || ||||||||| |||| ||| ||||||||||    
T  1841 aaaataaataaagagataagtgtttagagttttgcaatttaatctgtttgcaacggagcaaagtt 1905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 678
Target Start/End: Complemental strand, 6844 - 6768
Alignment:
Q  602 cacacaagatacaaaacaagcaaaatctcaaaccaaacctagaaaccattaatcaattatactaattaacacaattg 678  Q
    ||||||||  |||||||||| | ||||||||||||||| ||  | | |||||||||||||| |||| |||| |||||    
T  6844 cacacaagtaacaaaacaagtacaatctcaaaccaaacataagagcaattaatcaattatattaataaacaaaattg 6768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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