View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D611-LTR4-TNT-insertion-9 (Length: 424)
Name: D611-LTR4-TNT-insertion-9
Description: D611-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D611-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 35442971 - 35442819
Alignment:
| Q |
29 |
attaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaaaaagtgagagtggttaagaaa |
128 |
Q |
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| T |
35442971 |
attaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaaatagtgagagtggttaagaaa |
35442872 |
T |
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| Q |
129 |
caatcttgttcttttggcaggctgaaacaattttgtatttgtgttagaaatat |
181 |
Q |
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| T |
35442871 |
caatcttgttcttttggcaggctgaaacaattttgtatttgtgttagaaatat |
35442819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 263 - 418
Target Start/End: Complemental strand, 35442792 - 35442637
Alignment:
| Q |
263 |
atgtttgagtaacatttgtttttaacaactacctcactaatttcagcttaccaaattaaatagatattttggaaaccaaattcttgtttaattatacgaa |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35442792 |
atgtttgagtaacatttgtttttaacaactacctcactaatttcagcttaccaaattaaatagatattttggaaaccaaattcttgtttaattatacgaa |
35442693 |
T |
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| Q |
363 |
gtagaacaaaataaagtaaattccaagccctaataacaagttccctctccntcctc |
418 |
Q |
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| T |
35442692 |
gtagaacaaaataaagtaaattcaaagccctaataacaagttccttctccatcctc |
35442637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 35291081 - 35291021
Alignment:
| Q |
47 |
gtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaa |
107 |
Q |
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| T |
35291081 |
gtgattaataagatatatgttaaataattagttaataacatatatttttgtggttaatgaa |
35291021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 22257585 - 22257507
Alignment:
| Q |
29 |
attaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaa |
107 |
Q |
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| T |
22257585 |
attaatgaagtagtcaaagtgattaatgagatacatgttaaaaaactgactgctaacatataattttgtggttaatgaa |
22257507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 5748142 - 5748097
Alignment:
| Q |
48 |
tgattaatgagatatatgttaaataagttgttaataacatatattt |
93 |
Q |
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| T |
5748142 |
tgattaatgagatatatgttaaataagtggttaataacatacattt |
5748097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 4742119 - 4742179
Alignment:
| Q |
30 |
ttaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatata |
90 |
Q |
| |
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||||| ||||| |||||||| ||||||| ||||||| |||| |||| |||||||||||||| |
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|
| T |
4742119 |
ttaattaagtaatcaaagtggttaatgaaatatatggtaaaaaagtggttaataacatata |
4742179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 4751383 - 4751443
Alignment:
| Q |
30 |
ttaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatata |
90 |
Q |
| |
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||||| ||||| |||||||| ||||||| ||||||| |||| |||| |||||||||||||| |
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| T |
4751383 |
ttaattaagtaatcaaagtggttaatgaaatatatggtaaaaaagtggttaataacatata |
4751443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 16450938 - 16450997
Alignment:
| Q |
48 |
tgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaa |
107 |
Q |
| |
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|||||||||||||||||||||||||| | |||||| || || ||||| ||| |||||||| |
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| T |
16450938 |
tgattaatgagatatatgttaaataactagttaatgacttacattttagtgcttaatgaa |
16450997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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