View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: D682-LTR4-TNT-insertion-14 (Length: 210)
Name: D682-LTR4-TNT-insertion-14
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] D682-LTR4-TNT-insertion-14 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 3900 - 3706
Alignment:
| Q |
8 |
ctagccaccaaaataagtgaaacaatgacacgaaataaaagattcggctgtgaaaataatgaaagataacttcaaaacgcaccaaataaaatatgcatct |
107 |
Q |
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| T |
3900 |
ctagccaccaaaataagtgaaacaatgacacgaaataaaagattcagctgtgaaaataatgaaagataacttcaaaacgcaccaaataaaatatgcatct |
3801 |
T |
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| Q |
108 |
gggtatatgtcacctgtgtaaaaccttcttttctcttttgtccaatttttgccnnnnnnnccgtagcttctttgtgataccaatgactggtgatc |
202 |
Q |
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| T |
3800 |
gggtatttgtcacctgtgtaaaaccttcttttctcttttgtccaatttttgcctttttttccgtagcttctttgtgataccaatgactggtgatc |
3706 |
T |
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