View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: D682-LTR4-TNT-insertion-15 (Length: 70)

Name: D682-LTR4-TNT-insertion-15
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] D682-LTR4-TNT-insertion-15
D682-LTR4-TNT-insertion-15
[»] chr5 (1 HSPs)
chr5 (8-62)||(37017445-37017499)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 37017499 - 37017445
Alignment:
8 cgttgctcaaggctttgaagctgctcttgcaggagcagtaggagtttttgtgatc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37017499 cgttgctcaaggctttgaagctgctcttgcaggagcagtaggagtttttgtgatc 37017445  T

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