View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9045J-LTR4-TNT-insertion-5 (Length: 399)
Name: F9045J-LTR4-TNT-insertion-5
Description: F9045J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9045J-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 38277654 - 38277273
Alignment:
| Q |
8 |
tttttatcaaactcacaattattatgattccttttttcaggaaaccgaagtgttaacacataaaaaaggagttagaaatgttttgtacaaacaaaatgtt |
107 |
Q |
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| T |
38277654 |
tttttatcaaactcacaattattatgattccttttttcaggaaaccgaagtgttaacacataaaaaaggagttagaaatgttttgtacaaacaaaatgtt |
38277555 |
T |
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| Q |
108 |
attgaaataagattgggcaattaactaattttttggtcgtttagagttaaaatattaccatggcaaattcttatttacccgccaataaaaggtgagtata |
207 |
Q |
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| T |
38277554 |
attgaaataagattgggcaattaactaattttttggtcgtttagagttaaaatattaccatggcaaattcttatttacccgccaataaaaggtgagtata |
38277455 |
T |
|
| Q |
208 |
gttatcaatgcatatctgacatcattcaaattcattcatttgtctatcattgtctataacataaatagtgaaagacaaacatctgattttgattggtgtc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38277454 |
gttatcaatgcatatctgacatcattcaaattcattcatttgtctatcattgtctataacataaatagtgaaagacaaacatctgattttgattggtgtc |
38277355 |
T |
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| Q |
308 |
aactcaagatggataactctacacaccttttgttggtaggtattgcaattagcacctattcatactaataataatagtatta |
389 |
Q |
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| T |
38277354 |
aactcaagatggataactctacacaccttttgttgataggtattgcaattagcacctattcatactaataataatagtatta |
38277273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 36328240 - 36328315
Alignment:
| Q |
267 |
cataaatagtgaaagacaaacatctgattttgattggtgtcaactcaagatggataactctacacaccttttgttg |
342 |
Q |
| |
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|
| T |
36328240 |
cataaatagtggaaggcaaatgactgattttgattggtgccaactcagcatgggtaactctacccaccttttgttg |
36328315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 49197444 - 49197488
Alignment:
| Q |
262 |
tataacataaatagtgaaagacaaacatctgattttgattggtgt |
306 |
Q |
| |
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|||||||||||||||| |||| ||| || |||||||||||||||| |
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| T |
49197444 |
tataacataaatagtggaagataaatatatgattttgattggtgt |
49197488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 29610027 - 29610109
Alignment:
| Q |
260 |
tctataacataaatagtgaaagacaaacatctgattttgattggtgtcaactcaagatggataactctacacaccttttgttg |
342 |
Q |
| |
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|||||||||||| || ||||||||||| | | |||||||||| |||||||||| ||| ||| ||||| |||||||||||| |
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| T |
29610027 |
tctataacataagtaatgaaagacaaataaataattttgattgatgtcaactcagcatgtgtaattctactcaccttttgttg |
29610109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 43345463 - 43345427
Alignment:
| Q |
293 |
attttgattggtgtcaactcaagatggataactctac |
329 |
Q |
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||||| |||||||||||||||| |||||||||||||| |
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|
| T |
43345463 |
attttaattggtgtcaactcaacatggataactctac |
43345427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 34401679 - 34401717
Alignment:
| Q |
291 |
tgattttgattggtgtcaactcaagatggataactctac |
329 |
Q |
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|||||||||||| ||||||||||| |||||||||||||| |
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| T |
34401679 |
tgattttgattgatgtcaactcaatatggataactctac |
34401717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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