View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9049J-LTR4-TNT-insertion-1 (Length: 424)
Name: F9049J-LTR4-TNT-insertion-1
Description: F9049J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9049J-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 43327291 - 43326885
Alignment:
| Q |
8 |
aatatgagtgtcctagtttaggcaaagaagctaattatgttgagcttgattataatgaagaaatgttgctgatgtcatatgtggattgcaatgaagcaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43327291 |
aatatgagtgtcctagtttaggcaaagaagctaattatgttgagcttgattataatgaagaaatgttgctgatgtcatatgtggattgcaatgaagcaaa |
43327192 |
T |
|
| Q |
108 |
aggagaggatgtgtggtttctggattcgggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43327191 |
aggagaggatgtgtggtttctggattcgggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
43327092 |
T |
|
| Q |
208 |
aaattgggaaataattcaaggatgtcagtaagaggaaaaggaaatgtaaggttgttagtaagcggtgttgttcatgtagtcacataggtgttttatgtgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43327091 |
aaattgggaaataattcaaggatgtcagtaagaggaaaaggaaatgtaaggttgttagtaagcggtgttgttcatgtagtcacataggtgttttatgtgc |
43326992 |
T |
|
| Q |
308 |
cggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattcaaaatgataagtgtcgaatttaccatccggtgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43326991 |
cggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattcaaaatgataagtgtcgaatttaccatccggtgaa |
43326892 |
T |
|
| Q |
408 |
aggatta |
414 |
Q |
| |
|
||||||| |
|
|
| T |
43326891 |
aggatta |
43326885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 177 - 414
Target Start/End: Complemental strand, 4310426 - 4310187
Alignment:
| Q |
177 |
tgatctaaacgaaagctttacacaaa--tggtgaaattgggaaataattcaaggatgtcagtaagaggaaaaggaaatgtaaggttgttagtaagcggtg |
274 |
Q |
| |
|
||||||||| |||||||||||||| | | |||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4310426 |
tgatctaaatgaaagctttacacatagattgtgaaattatgaaataattcaaagatgtcagtgagaggaaaaggaaatgtaatgttgttagtaagtggtg |
4310327 |
T |
|
| Q |
275 |
ttgttcatgtagtcacataggtgttttatgtgccggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattca |
374 |
Q |
| |
|
|| | |||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4310326 |
ttatgcatgtagtcacaaaggtgttttatgtgcgggagttaaggaatagcttgttgagcattggtcagctacaacaaagaggattatcaattgttattca |
4310227 |
T |
|
| Q |
375 |
aaatgataagtgtcgaatttaccatccggtgaaaggatta |
414 |
Q |
| |
|
| |||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
4310226 |
acatgacaagtgtcgaatttaccatccagtgaaaggatta |
4310187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 4311954 - 4311781
Alignment:
| Q |
8 |
aatatgagtgtcctagtttaggcaaagaagctaattatgttgagcttgattataatgaagaaatgttgctgatgtcatatgtggattgcaatgaagcaaa |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4311954 |
aatatgggtgtcctagtttaggcaaagaagctaattatattgagcttgattataacgaagaaatgtcattgatgtcatatgtggatcataatgaagcaaa |
4311855 |
T |
|
| Q |
108 |
aggagaggatgtgtggtttctggattcgggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatct |
182 |
Q |
| |
|
| ||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||| |||||||||||||| |
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|
| T |
4311854 |
aagagaggatgtgtggtttct-gatttgggatgcaataatcatatgtgcggtgacaaaaccttgtttagtgatct |
4311781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 48199841 - 48200247
Alignment:
| Q |
8 |
aatatgagtgtcctagtttaggcaaagaagctaattatgttgagcttgattataatgaagaaatgttgctgatgtcatatgtggattgcaatgaagcaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48199841 |
aatatgagtgtcctagtttaggcaaagaagctaattatgctgagcttgataataatgaagaaatgttgctgatgtcatatgtggatcataatgaagcaaa |
48199940 |
T |
|
| Q |
108 |
aggagaggatgtgtggtttctggattcgggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
207 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48199941 |
aagagaggatgtgtggtttctggattcaggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
48200040 |
T |
|
| Q |
208 |
aaattgggaaataattcaaggatgtcagtaagaggaaaaggaaatgtaaggttgttagtaagcggtgttgttcatgtagtcacataggtgttttatgtgc |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48200041 |
aaattgggaaataattcaagcatgtcagtaagaggaaaaggaaatgtaaggctgttagtaagcggtgttgttcatgtagtcacagaggtgttttatgtgc |
48200140 |
T |
|
| Q |
308 |
cggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattcaaaatgataagtgtcgaatttaccatccggtgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48200141 |
cggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattcaaaatgataagtgtcgaatttaccatccggtgaa |
48200240 |
T |
|
| Q |
408 |
aggatta |
414 |
Q |
| |
|
||||||| |
|
|
| T |
48200241 |
aggatta |
48200247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 48208424 - 48208830
Alignment:
| Q |
8 |
aatatgagtgtcctagtttaggcaaagaagctaattatgttgagcttgattataatgaagaaatgttgctgatgtcatatgtggattgcaatgaagcaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48208424 |
aatatgagtgtcctagtttaggcaaagaagctaattatgctgagcttgataataatgaagaaatgttgctgatgtcatatgtggatcataatgaagcaaa |
48208523 |
T |
|
| Q |
108 |
aggagaggatgtgtggtttctggattcgggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
207 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48208524 |
aagagaggatgtgtggtttctggattcaggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
48208623 |
T |
|
| Q |
208 |
aaattgggaaataattcaaggatgtcagtaagaggaaaaggaaatgtaaggttgttagtaagcggtgttgttcatgtagtcacataggtgttttatgtgc |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48208624 |
aaattgggaaataattcaagcatgtcagtaagaggaaaaggaaatgtaaggctgttagtaagcggtgttgttcatgtagtcacagaggtgttttatgtgc |
48208723 |
T |
|
| Q |
308 |
cggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattcaaaatgataagtgtcgaatttaccatccggtgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48208724 |
cggagttaaggaataacttattgagcattggtcagctacaacaaaaaggattatcaattgttattcaaaatgataagtgtcgaatttaccatccggtgaa |
48208823 |
T |
|
| Q |
408 |
aggatta |
414 |
Q |
| |
|
||||||| |
|
|
| T |
48208824 |
aggatta |
48208830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 26972984 - 26972664
Alignment:
| Q |
8 |
aatatgagtgtcctagtttaggcaaagaagctaattatgttgagcttgattataatgaagaaatgttgctgatgtcatatgtggattgcaatgaagcaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26972984 |
aatatgagtgtcctagtttaggcaaagaagctaattatgctgagcttgattataatgaagaaatgttgctgatgtcgtatgtggatcataatgaagcaaa |
26972885 |
T |
|
| Q |
108 |
aggagaggatgtgtggtttctggattcgggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
207 |
Q |
| |
|
| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26972884 |
aagagaggatgtgtggtttttagattcaggatgcagcaatcatatgtgcggagacaaaacgttgtttagtgatctaaacgaaagctttacacaaatggtg |
26972785 |
T |
|
| Q |
208 |
aaattgggaaataattcaaggatgtcagtaagaggaaaaggaaatgtaaggttgttagtaagcggtgttgttcatgtagtcacataggtgttttatgtgc |
307 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
26972784 |
aaattgggaaata-------------agtaagaggaaaaggaaatgtaaggctgttagtaagcggtgttgttcatgtagtcatagaggtgttttatgtgc |
26972698 |
T |
|
| Q |
308 |
cggagttaaggaataacttattgagcattggtca |
341 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |
|
|
| T |
26972697 |
cagagttaaggaataacttgttgagcattggtca |
26972664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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