View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9049J-LTR4-TNT-insertion-2 (Length: 337)
Name: F9049J-LTR4-TNT-insertion-2
Description: F9049J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9049J-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 37430298 - 37429978
Alignment:
| Q |
10 |
attcgtcttcctcaaacagtgaaagttgagaatgttgtttcttctgctgaatgtttgaactcggatcccactgttacggtatgttttaagtaagtggttg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37430298 |
attcgtcttcctcaaacagtgaaagttgagaatgttgtttcttctgctgaatgtttgaactcggatcccactgttacggtatgttttaagtaagtggttg |
37430199 |
T |
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| Q |
110 |
atttgaatgatcatatattatggtagtggatgaaacaaaatcccgctgaagggctccctatatccggtcgtataactgcaaccgagccgtttcttcatct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37430198 |
atttgaatgatcatatattatggtagtggatgaaacaaaatcccgctgaagggctccctatatccggtcgtataactgcaaccgagccgtttcttcatct |
37430099 |
T |
|
| Q |
210 |
ctggttgcctagctggagaattatccatctttctcttgtgattgttcaacaatgatgaagcatcatcatctatcacttccccttcttctgcaatgtattc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37430098 |
ctggttgcctagctggagaattatccatctttctcttgtgattgttcaacaatgatgaagcatcatcatctatcacttccccttcttctgcaatgtattc |
37429999 |
T |
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| Q |
310 |
atttatgtctttctgtaattg |
330 |
Q |
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||||||||||||||| ||||| |
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| T |
37429998 |
atttatgtctttctgcaattg |
37429978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 37435026 - 37435160
Alignment:
| Q |
198 |
gtttcttcatctctggttgcctagctggagaattatccatctttctcttgtgattgttcaacaatgatgaagcatcatc--atctatcacttccccttct |
295 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
37435026 |
gtttcttcatctctggttgcctagctggaggattatccatctttcttttgtgactgttcaacaatgatgaagcatcatcatatctatcacctccccttct |
37435125 |
T |
|
| Q |
296 |
tctgcaatgtattcatttatgtctttctgtaattg |
330 |
Q |
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| T |
37435126 |
tctgcaatgtattcattcatgtctttctgcaattg |
37435160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 12079567 - 12079484
Alignment:
| Q |
10 |
attcgtcttcctcaaacagtgaaagttgagaatgttgtttcttctgctgaatgtttgaactcggatcccactgttacggtatgt |
93 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12079567 |
attcttcttcctcaaacagtgaaagttgagaatgttgtttcttctgctgaatgtttgaactcagatcccactgttacggtatgt |
12079484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 32444495 - 32444412
Alignment:
| Q |
10 |
attcgtcttcctcaaacagtgaaagttgagaatgttgtttcttctgctgaatgtttgaactcggatcccactgttacggtatgt |
93 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
32444495 |
attcctcttcctcaaacagtgaaagttgagaatattgtttcttctgctgaatgtttgaattcagatcccactattacggtatgt |
32444412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 25825731 - 25825677
Alignment:
| Q |
17 |
ttcctcaaacagtgaaagttgagaatgttgtttcttctgctgaatgtttgaactc |
71 |
Q |
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||||| || ||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25825731 |
ttccttaatcagggaaagttgagaatgttgcttcttctgctgaatgtttgaactc |
25825677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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