View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9072J-LTR4-TNT-insertion-1 (Length: 378)
Name: F9072J-LTR4-TNT-insertion-1
Description: F9072J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9072J-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 37244962 - 37244602
Alignment:
| Q |
8 |
gttcaaaattcaagatggtaataaaggaaatgatggtaattcttctacaagtgggattatgaggattaagctagttgtgagcaaggaagagttgaaaagg |
107 |
Q |
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| T |
37244962 |
gttcaaaattcaagatggtaataaaggaaatgatggtaattcttctacaagtgggattatgaggattaagctagttgtgagcaaggaagagttgaaaagg |
37244863 |
T |
|
| Q |
108 |
gtgttgagtaataagaatattgaaaatggtgttaagaatacttctttggaggaattgctaaaagatatgaagttgaaagaaaaaagtgtgtctagggttg |
207 |
Q |
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| T |
37244862 |
gtgttgagtaataagaatattgaaaatggtgttaagaatacttctttggaggaattgctaaaagatatgaagttgaaagaaaaaagtgtgtctagggttg |
37244763 |
T |
|
| Q |
208 |
aggaaattgatgatgggggattagattcttggaagccagctttagatagtattcctgaggatcactccatgaagctataggtagtaaattgtcatgaaca |
307 |
Q |
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| T |
37244762 |
aagaaattgatgatgggggattagattcttggaagccagctttagatagtattcctgaggatcactccatgaagctataggtagtaaattgtcatgaaca |
37244663 |
T |
|
| Q |
308 |
atcctatattatgtaaataaagacaatatatgtttttatttatttgatagtgcattgaatt |
368 |
Q |
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| T |
37244662 |
atcctatattatgtaaataaagacaatatatgtttttatttatttgatagtgcattgaatt |
37244602 |
T |
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