View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9072J-LTR4-TNT-insertion-3 (Length: 267)
Name: F9072J-LTR4-TNT-insertion-3
Description: F9072J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9072J-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 25745250 - 25745497
Alignment:
| Q |
10 |
cacaagcatcagagtgcaaaaaaggaccaagagaatttggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgtt |
109 |
Q |
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| T |
25745250 |
cacaagcatcagagtgcaaaaaaggaccaagagaatttggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgtt |
25745349 |
T |
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| Q |
110 |
ctctacacttattcgattatcgaaagaaatgctgaactttgactttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaac |
209 |
Q |
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| T |
25745350 |
ctctacacttattcgattatcgaaagaaatgctgaactttgactttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaac |
25745449 |
T |
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| Q |
210 |
acggccaattttgttgcatgaaaggcgattaaccaccacagaagaatt |
257 |
Q |
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| T |
25745450 |
acggccaattttgttgcatgaaaggcgattaaccaccacagaagaatt |
25745497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 25739243 - 25739478
Alignment:
| Q |
20 |
agagtgcaaaaaaggaccaagagaatttggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgttctctacactt |
119 |
Q |
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| T |
25739243 |
agagtgcataaaaggaccaagagaattaggcgacggatcataaaa--aactaaagttttatatgatcataactcaagttatcatgttgatccgtgcactt |
25739340 |
T |
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| Q |
120 |
attcgattatcgaaagaaatgctgaactttgactttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaacacggccaatt |
219 |
Q |
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| T |
25739341 |
attcaattattgagaggaatactgaactttgactttgagaagatcaccaagcattcttctaaaatgcataatcaactggtagccacaaacacgaccactt |
25739440 |
T |
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| Q |
220 |
ttgttgcatgaaaggcgattaaccaccacagaagaatt |
257 |
Q |
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| T |
25739441 |
ttgttgcgtaaaatgcgattaaccaccacagaagaatt |
25739478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 25731314 - 25731463
Alignment:
| Q |
12 |
caagcatcagagtgcaaaaaaggaccaagagaatttggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgttct |
111 |
Q |
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| T |
25731314 |
caagcattagagtgcaaaaaatgac--agagaattaggcgactgatcataaaa--aactaaagttttatatgatcacgactcaagttatcatgttgatcc |
25731409 |
T |
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| Q |
112 |
ctacacttattcgattatcgaaagaaatgctgaactttgactttgacaaaatca |
165 |
Q |
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| T |
25731410 |
gtacacttattcggttactgaaaggaatgccaacctttgactttgacaaaatca |
25731463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 25731707 - 25731792
Alignment:
| Q |
171 |
cattcgtctaaaatgcataatcaactggtagccacaaacacggccaattttgttgcatgaaaggcgattaaccaccacagaagaatt |
257 |
Q |
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| T |
25731707 |
cattcttctaaaatg-ataatcaaatggtagccacaaacacgaccatttttgttgcgtgaaaggtgattaaccaccacagaagaatt |
25731792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 45300362 - 45300271
Alignment:
| Q |
154 |
ttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaacacggccaattttgttgcatgaaaggcgattaaccac |
245 |
Q |
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| T |
45300362 |
ttgacaaaattaccaagcattattctattatgcataatcaactggtagccattaacatgcccatttttgttgcctgaaaggcgattaaccac |
45300271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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