View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9091J-LTR4-TNT-insertion-6 (Length: 575)
Name: F9091J-LTR4-TNT-insertion-6
Description: F9091J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9091J-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Complemental strand, 29305955 - 29305396
Alignment:
| Q |
8 |
cctataaataataaataataagactctttttgtatttgatcactttggtggtagttacaagttcttgacaatgtttggcttcttttattgaattgtctgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29305955 |
cctataaataataaataataagactctttttgtatttgatcactttggtggtagttacaagttcttgacaatgtttggcttcttttattgaattgtctgg |
29305856 |
T |
|
| Q |
108 |
tccaacaaagcataataacataagaggttggcacaaaggaatagaactgtagcactttttggtgtctaaagtgaaatttttagtcacataataattgcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29305855 |
tccaacaaagcataataacataagaggttggcacaaaggaatagaactgtagcactttctggtgtctaaagtgaaatttttagtcacataataattgcat |
29305756 |
T |
|
| Q |
208 |
gatttttacttggtaattaccataatcattatatgatataggattcaaataacaaggttatttgactatattgaagcttcaaaaggcatgtattgacatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29305755 |
gatttttacttggtaattaccataatcattatatgatataggattcaaataacaaggttatttgactatattgaagcttcaaaaggcatgtattgacatc |
29305656 |
T |
|
| Q |
308 |
cacacccggtatattagattatgattcactattgtctcggcaagtttttacgcagtcaacccaatggtggtttttggatgatagtttaaattttaacgta |
407 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
29305655 |
cacacacggtatattagattatgattcactattgtctcggcaagtttttacgcagtcaacacaatggtggtttttggatgatagtctaaattttaacgta |
29305556 |
T |
|
| Q |
408 |
aattatgatgttttaaatatnnnnnnnnnnttaaatttgaaatctagattgttcaattttagtcaacggttattgtcgatatactgattgcatttcaatt |
507 |
Q |
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| T |
29305555 |
aattatgatgttttaaatataaaaaaaaaattaaatttgaaatctagattgttcaattttagtcaacggttattgtcgatatactgattgcatttcaatt |
29305456 |
T |
|
| Q |
508 |
gatgactnnnnnnnnntccaaatttgatcatcataaaaatttagaattttattgaaatta |
567 |
Q |
| |
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|
| T |
29305455 |
gatgactaaaaaaaaatccaaatttgatcatcataaaaatttagaattttattgaaatta |
29305396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 29297218 - 29297000
Alignment:
| Q |
18 |
ataaataataagactctttttgtatttgatcactttggtggtagttacaagttcttgacaatgtt-------tggcttcttttattgaattgtctggtcc |
110 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||| ||||||||| |||||| |||||| |
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| T |
29297218 |
ataaataagaagattctttttgtatttgatcactttggt---agttacaagttattgactatgttggctttgtggcatcttttattcaattgtatggtcc |
29297122 |
T |
|
| Q |
111 |
aacaaagcataataacataagaggttggcacaaaggaatagaactgtagcactttttggtgtctaaagtgaaat-ttttagtcacataataattgcatga |
209 |
Q |
| |
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| |||||||| || |||||||||||||| |||||||||||||||| ||||||| |||||| || |||||| | |||||| |||||||||||||||| | |
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| T |
29297121 |
cataaagcata-tagtataagaggttggcaaaaaggaatagaactgtggcactttctggtgtgtacagtgaattattttaggcacataataattgcatta |
29297023 |
T |
|
| Q |
210 |
tttttacttggtaattaccataa |
232 |
Q |
| |
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|
| T |
29297022 |
tatttacttggtaattaccataa |
29297000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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