View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9100J-LTR4-TNT-insertion-1 (Length: 166)

Name: F9100J-LTR4-TNT-insertion-1
Description: F9100J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9100J-LTR4-TNT-insertion-1
F9100J-LTR4-TNT-insertion-1
[»] chr3 (17 HSPs)
chr3 (9-157)||(2729653-2729801)
chr3 (14-89)||(33914602-33914677)
chr3 (14-89)||(1475320-1475395)
chr3 (9-74)||(8402585-8402650)
chr3 (9-74)||(19263933-19263998)
chr3 (9-89)||(10341796-10341875)
chr3 (9-89)||(19219246-19219326)
chr3 (9-89)||(25883103-25883183)
chr3 (9-72)||(12409475-12409538)
chr3 (25-73)||(18065832-18065880)
chr3 (9-89)||(21017877-21017957)
chr3 (9-72)||(13911282-13911345)
chr3 (9-74)||(21829167-21829232)
chr3 (9-74)||(26297764-26297829)
chr3 (25-66)||(27415194-27415235)
chr3 (9-89)||(12573290-12573370)
chr3 (9-89)||(13549754-13549834)
[»] chr5 (19 HSPs)
chr5 (14-89)||(24517354-24517429)
chr5 (9-88)||(25680597-25680676)
chr5 (9-74)||(15205658-15205723)
chr5 (9-89)||(12340049-12340129)
chr5 (9-89)||(16634046-16634126)
chr5 (9-89)||(17382070-17382150)
chr5 (9-89)||(18222493-18222573)
chr5 (9-74)||(24841768-24841833)
chr5 (9-89)||(25594727-25594807)
chr5 (9-89)||(17027527-17027607)
chr5 (9-74)||(20694655-20694720)
chr5 (9-70)||(24268574-24268635)
chr5 (9-70)||(24345203-24345264)
chr5 (9-74)||(24410964-24411029)
chr5 (9-65)||(22229828-22229884)
chr5 (16-72)||(25942158-25942214)
chr5 (49-89)||(30072178-30072218)
chr5 (9-72)||(7742904-7742967)
chr5 (9-80)||(23157823-23157894)
[»] chr1 (10 HSPs)
chr1 (7-89)||(30675484-30675566)
chr1 (9-89)||(11770029-11770109)
chr1 (9-74)||(12810337-12810402)
chr1 (9-70)||(12423949-12424010)
chr1 (14-74)||(34381723-34381783)
chr1 (9-89)||(50047181-50047261)
chr1 (9-52)||(25266380-25266423)
chr1 (16-74)||(25494521-25494579)
chr1 (16-89)||(8247699-8247772)
chr1 (9-74)||(26657491-26657556)
[»] chr7 (14 HSPs)
chr7 (9-89)||(22067841-22067921)
chr7 (9-89)||(29544519-29544599)
chr7 (14-89)||(20470850-20470925)
chr7 (9-89)||(1255248-1255328)
chr7 (9-72)||(7142115-7142178)
chr7 (9-88)||(21545834-21545913)
chr7 (14-89)||(23124900-23124975)
chr7 (9-89)||(7815323-7815403)
chr7 (25-89)||(20446239-20446303)
chr7 (26-89)||(21471797-21471860)
chr7 (25-71)||(9066150-9066196)
chr7 (9-89)||(315185-315265)
chr7 (9-80)||(7372601-7372672)
chr7 (18-73)||(20461691-20461746)
[»] chr8 (14 HSPs)
chr8 (9-89)||(14977141-14977222)
chr8 (9-74)||(28901375-28901440)
chr8 (9-89)||(12956489-12956569)
chr8 (9-89)||(16054294-16054374)
chr8 (9-89)||(29047354-29047431)
chr8 (9-89)||(5570176-5570256)
chr8 (9-74)||(35135457-35135522)
chr8 (25-85)||(26882412-26882472)
chr8 (9-89)||(32239287-32239367)
chr8 (14-85)||(16052317-16052388)
chr8 (9-74)||(28902104-28902169)
chr8 (9-69)||(11310239-11310299)
chr8 (14-89)||(13081977-13082052)
chr8 (9-80)||(24584759-24584830)
[»] chr6 (3 HSPs)
chr6 (9-89)||(13759486-13759566)
chr6 (9-89)||(16527890-16527970)
chr6 (16-89)||(15574925-15574997)
[»] chr4 (16 HSPs)
chr4 (25-88)||(5906771-5906834)
chr4 (9-87)||(9783018-9783096)
chr4 (15-69)||(18898011-18898065)
chr4 (16-89)||(25315273-25315346)
chr4 (14-71)||(27302796-27302853)
chr4 (9-74)||(1676330-1676395)
chr4 (9-74)||(1682858-1682923)
chr4 (9-88)||(12111366-12111445)
chr4 (7-78)||(26159767-26159838)
chr4 (16-78)||(22119657-22119719)
chr4 (9-74)||(34864328-34864391)
chr4 (9-74)||(9288225-9288290)
chr4 (9-66)||(23353646-23353703)
chr4 (30-74)||(4953697-4953741)
chr4 (14-74)||(20044193-20044253)
chr4 (9-52)||(10320254-10320297)
[»] chr2 (10 HSPs)
chr2 (9-89)||(30998771-30998851)
chr2 (18-89)||(35031702-35031773)
chr2 (16-74)||(21844671-21844729)
chr2 (16-89)||(21505181-21505254)
chr2 (9-69)||(24047402-24047462)
chr2 (9-89)||(16593785-16593867)
chr2 (16-74)||(21843044-21843102)
chr2 (18-87)||(15829136-15829205)
chr2 (9-89)||(35707803-35707883)
chr2 (30-89)||(25474037-25474096)
[»] scaffold0171 (1 HSPs)
scaffold0171 (9-55)||(21431-21477)
[»] scaffold0011 (1 HSPs)
scaffold0011 (9-54)||(228219-228264)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 5e-79; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 2729653 - 2729801
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatcttagcccaaaatattatatgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2729653 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatcttagcccaaaatattatatgat 2729752  T
Q  109 gctccgtaatcagcgaggtttgcaagctacctgagtcttaactagatta 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2729753 gctccgtaatcagcgaggtttgcaagctacctgagtcttaactagatta 2729801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 33914602 - 33914677
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||| ||||||||| ||||||||| |||||||||||  |||| |||||||||||||||| ||||||||||    
T  33914602 tgaattacaacgactcgagtaaaaacaatacaatatgttcctcaaaccgttgacaactcctataactctcatctta 33914677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 1475320 - 1475395
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||| |||||||||||||| |||| ||||| |||||  ||||||||| ||||||| ||| ||||||||||    
T  1475320 tgaattacaacgactcgagtgaaaataatacaatatattcctcaaaccattgaaaactcctctaactctcatctta 1475395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8402585 - 8402650
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    ||||||||||||||| ||||||| ||||||||||| ||  |||||||  |||||||||||||||||    
T  8402585 aaaaatgaattacaacgactcgaatgaaaacaatacaaattgttcctcaaaccattgacaactcct 8402650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 19263933 - 19263998
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||| ||||| |||||||||||||| ||||  |||||||||||||||||    
T  19263933 aaaagtgaattacaacgactctagtgacaacaatataatatgatcctcaaaccattgacaactcct 19263998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 10341875 - 10341796
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||  ||||||||||||| ||| |||||||  ||||||||||||||||| |||||| |||||||    
T  10341875 aaaagtgaattacaacgactttagtgaaaacaatacaatttgttcctc-aaccattgacaactcctctaattcacatctta 10341796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 19219246 - 19219326
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||| |||||||  |||| |||||| ||||  |||||||||||||||| |||| ||||||||||    
T  19219246 aaaagtgaattacaacgactctagtgaaagtaataaaatatgctcctcaaaccattgacaactccaataactctcatctta 19219326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 25883183 - 25883103
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||  ||  ||||||||||| | | | ||||||||||    
T  25883183 aaaactgaattacaacgattcgagtgaaaacaatataatatgttcctcaaaaaattgacaactcttctgactctcatctta 25883103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 12409538 - 12409475
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactc 72  Q
    ||||||||||||||| ||||| |||||||| |||| ||||||||| |  |||||||||||||||    
T  12409538 aaaaatgaattacaacgactcaagtgaaaataatacaatatgttcttcaaaccattgacaactc 12409475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 18065880 - 18065832
Alignment:
Q  25 gactcgagtgaaaacaatataatatgttccttgaaccattgacaactcc 73  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||||||||    
T  18065880 gactcgagtgaaaacaatacaatatgtttctcaaaccattgacaactcc 18065832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 21017957 - 21017877
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||||  |||||| ||||||||||||||||  ||  |||| |||||||| ||| ||||||||||    
T  21017957 aaaactgaattacaacgactcggttgaaaataatataatatgttcctcaaattattgccaactcctctaactctcatctta 21017877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 13911345 - 13911282
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactc 72  Q
    |||| |||||||||| || || |||||||||||||  ||||||||||  |||||||||||||||    
T  13911345 aaaagtgaattacaatgattcaagtgaaaacaataccatatgttcctcaaaccattgacaactc 13911282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 21829167 - 21829232
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||| | |||||| |||| || ||||||||  |||||||||||||||||    
T  21829167 aaaactgaattacaacgactcaaatgaaaataatacaaaatgttcctcaaaccattgacaactcct 21829232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26297829 - 26297764
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||||| |||||||||||||| | ||| ||  ||||||| |||||||||    
T  26297829 aaaattgaattacaacgactcgaatgaaaacaatataaaaagtttctcaaaccattaacaactcct 26297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 27415235 - 27415194
Alignment:
Q  25 gactcgagtgaaaacaatataatatgttccttgaaccattga 66  Q
    ||||||||||||||||||| |||||||||||| |||| ||||    
T  27415235 gactcgagtgaaaacaatacaatatgttccttaaaccgttga 27415194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 12573370 - 12573290
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||||||||||||| | ||||||||||||||||| ||    |||||  |||||||||||| || | ||| ||||||||||    
T  12573370 aaaaatgaattacaacgtctcgagtgaaaacaatacaaagcattcctcaaaccattgacaaatcatctaactctcatctta 12573290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 13549834 - 13549754
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||||||||||||| | ||||||||||||||||| ||    |||||  |||||||||||| || | ||| ||||||||||    
T  13549834 aaaaatgaattacaacgtctcgagtgaaaacaatacaaagcattcctcaaaccattgacaaatcatctaactctcatctta 13549754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 4e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 24517429 - 24517354
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||| |||||| |||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||    
T  24517429 tgaattacaacgactcgggtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaattctcatctta 24517354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 25680676 - 25680597
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctt 88  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||  ||||||||| || ||| |||| |||||||||    
T  25680676 aaaattgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgaaaaatccaataactctcatctt 25680597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 15205723 - 15205658
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||  ||||| |||||||||||    
T  15205723 aaaactgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccactgacaactcct 15205658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 12340049 - 12340129
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||| | |||||||| ||||||||||||||||  ||||||||||||||||| ||| ||||| ||||    
T  12340049 aaaactgaattacaatgacacaagtgaaaataatataatatgttcctcaaaccattgacaactcctctaactctcacctta 12340129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 16634126 - 16634046
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| ||  ||||||||||||||| |  || ||||||||||    
T  16634126 aaaagtgaattacaacgactcgagtgaaaacaatacaatatgtttctcaaaccattgacaactcatccaactctcatctta 16634046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17382070 - 17382150
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||| ||||| || | |||||||||||||| |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  17382070 aaaagtgaaatacaacgatttgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaactctcatctta 17382150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 18222573 - 18222493
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||||||| ||||||||| |||||||| ||  ||||||||||||||| | ||| ||||||||||    
T  18222573 aaaagtgaattacaatgactcgagttaaaacaatacaatatgtttctcaaaccattgacaactcatctaactctcatctta 18222493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 24841833 - 24841768
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| ||| |||||| ||||||||||||||||||| |||||||||||  ||||||||| |||||||    
T  24841833 aaaagtgacttacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgaaaactcct 24841768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 25594727 - 25594807
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||||||| |||||  |||| ||||||||||||| |||||||||||  ||||||||| || |||| ||| ||||||||||    
T  25594727 aaaaatgaaatacaacaactccagtgaaaacaatacaatatgttcctcaaaccattgagaaatcctctaactctcatctta 25594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 17027607 - 17027527
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||| ||||||||||||  |||||||||||  |||| ||||| || ||| ||| ||||||||||    
T  17027607 aaaagtgaattacaacgactcaagtgaaaacaattcaatatgttcctcaaacccttgaccacgcctctaactctcatctta 17027527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 20694720 - 20694655
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||||| ||||||||||| || | ||||||  |||||||||||| ||||    
T  20694720 aaaactgaattacaatgactcgaatgaaaacaatacaaaaagttcctcaaaccattgacaaatcct 20694655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 24268635 - 24268574
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaac 70  Q
    |||| ||||||| || ||||||||||||||||||| || ||||||||  |||||| ||||||    
T  24268635 aaaagtgaattataatgactcgagtgaaaacaatacaagatgttcctcaaaccatcgacaac 24268574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 24345264 - 24345203
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaac 70  Q
    |||| ||||||| || ||||||||||||||||||| || ||||||||  |||||| ||||||    
T  24345264 aaaagtgaattataatgactcgagtgaaaacaatacaagatgttcctcaaaccatcgacaac 24345203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 24410964 - 24411029
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||| | ||||||||||| || || |||||  |||||||||||||||||    
T  24410964 aaaactgaattacaacgactcaaatgaaaacaatacaaaattttcctcaaaccattgacaactcct 24411029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 22229884 - 22229828
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattg 65  Q
    |||| |||||||||| ||||| ||||||||||||| ||||  |||||| ||||||||    
T  22229884 aaaactgaattacaacgactcaagtgaaaacaatacaatacattccttaaaccattg 22229828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 25942214 - 25942158
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactc 72  Q
    |||||||| ||||||| |||||| ||||||| ||| ||||  |||||||||||||||    
T  25942214 aattacaacgactcgattgaaaataatataaaatgctcctcaaaccattgacaactc 25942158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 30072218 - 30072178
Alignment:
Q  49 tgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||  ||||||||||||||||| ||||||||||||||    
T  30072218 tgttcctcaaaccattgacaactcctctaattctcatctta 30072178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 7742904 - 7742967
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactc 72  Q
    |||| |||||||||| |||||||  |||||||||| || |||||| |  |||||||||||||||    
T  7742904 aaaagtgaattacaaagactcgaacgaaaacaatacaaaatgttcttcaaaccattgacaactc 7742967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 23157823 - 23157894
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataatt 80  Q
    |||| |||||||||| ||||| | |||||||||||  | | ||||||  ||||||||||||||||| |||||    
T  23157823 aaaagtgaattacaacgactcaaatgaaaacaataccaaaagttcctcaaaccattgacaactcctctaatt 23157894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 30675566 - 30675484
Alignment:
Q  7 acaaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||| || ||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||| ||||||||    
T  30675566 acaaaagtgtattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaattttcatctta 30675484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 11770029 - 11770109
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||| | || ||| ||||||||||    
T  11770029 aaaagtgaattacaacgacacgagtgaaaacaatacaatatgttccttaaaccattgacaaattctctaactctcatctta 11770109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 12810402 - 12810337
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    ||||||||||||||| |||| || ||||||||||| |||||||||||  |||||||||||||||||    
T  12810402 aaaaatgaattacaacgacttgaatgaaaacaatacaatatgttcctcaaaccattgacaactcct 12810337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 12423949 - 12424010
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaac 70  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||  ||||||| |||||    
T  12423949 aaaactgaattacaatgactcgagtgaaaacaatatcatatgttcctcaaaccattaacaac 12424010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 34381783 - 34381723
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||||| ||||||| ||||||||||||||||||||| |  ||||||| |||||||||    
T  34381783 tgaattacaacgactcgaatgaaaacaatataatatgttcttcaaaccattaacaactcct 34381723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 50047261 - 50047181
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||| | ||||||||||||||||||| |||||||| ||  || |||||||||||||| || || ||||||||    
T  50047261 aaaagtgaattaccatgactcgagtgaaaacaatacaatatgtttctcaaatcattgacaactcctctacttttcatctta 50047181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 25266380 - 25266423
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgtt 52  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  25266380 aaaaatgaattacaatgactcgagtgaaaacaatacaatatgtt 25266423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 25494521 - 25494579
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||||||||| || |||||||| | |||||||||||  |||||||||||||||||    
T  25494521 aattacaaggactcaagagaaaacaagacaatatgttcctcaaaccattgacaactcct 25494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 8247699 - 8247772
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||| ||||| |||||||| |||| |||||||||||  ||||||||| | ||||| ||| ||||||||||    
T  8247699 aattacaatgactcaagtgaaaataataaaatatgttcctcaaaccattgatatctcctctaactctcatctta 8247772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26657556 - 26657491
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| || |||||||||||||||| | ||| |||||  |||||||||||||||||    
T  26657556 aaaagtgaattacaacgaatcgagtgaaaacaatacattatattcctcaaaccattgacaactcct 26657491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 22067841 - 22067921
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||  ||||||||||||||||| ||| ||||||||||    
T  22067841 aaaattgaattacaatgactcgagtgaaaacaatacattatgttcctcaaaccattgacaactcctttaactctcatctta 22067921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 29544599 - 29544519
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||  ||| ||||||||||||| ||| ||||||||||    
T  29544599 aaaagtgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaactattgacaactcctctaactctcatctta 29544519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 20470850 - 20470925
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||| ||||  |||||||||||||||||||||||||  ||||||||||||||||| ||||| ||||||||    
T  20470850 tgaattacaacgacttaagtgaaaacaatataatatgttcctcaaaccattgacaactcctctaattatcatctta 20470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 1255248 - 1255328
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||||||||||||| ||||||||||||||||||| ||| | |||||  ||||||||||||||||| ||| ||||| ||||    
T  1255248 aaaaatgaattacaatgactcgagtgaaaacaatacaatttattcctcaaaccattgacaactcctctaactctcaactta 1255328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 7142178 - 7142115
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactc 72  Q
    |||| |||||||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  7142178 aaaagtgaattacaacgactcgagtgaaagcaataaaatatgttccttaaaccattgacaactc 7142115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 21545834 - 21545913
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctt 88  Q
    |||| ||| |||||| ||||||||||||||||||| |||||||||||  ||||||||||||||  | ||||| |||||||    
T  21545834 aaaagtgagttacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaacttatttaattatcatctt 21545913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 23124975 - 23124900
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||| ||||||||||||||||||| |||||||||||   |||| | ||||||||| ||| ||||||||||    
T  23124975 tgaattacaacgactcgagtgaaaacaatacaatatgttcctcagaccactaacaactcctctaaatctcatctta 23124900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 7815403 - 7815323
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| ||||||||||  || |||||||||| |||| |||||||| ||| |||||||||||| |||| ||| ||||||||||    
T  7815403 aaaactgaattacaaccacccgagtgaaaaaaatacaatatgtttcttaaaccattgacaagtcctttaactctcatctta 7815323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 20446303 - 20446239
Alignment:
Q  25 gactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||| ||||||||||| | |||||||| ||  ||||||||||||||||| ||||||||||||||    
T  20446303 gactcaagtgaaaacaaaacaatatgtttctgaaaccattgacaactcctctaattctcatctta 20446239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 21471860 - 21471797
Alignment:
Q  26 actcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||||||||||||||||||||| |  || ||||||||| |||| ||| | ||||||||    
T  21471860 actcgagtgaaaacaatataatatgttcttaaaatcattgacaaatcctctaaatatcatctta 21471797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 9066196 - 9066150
Alignment:
Q  25 gactcgagtgaaaacaatataatatgttccttgaaccattgacaact 71  Q
    ||||||||||||||||||| |||||||||||  || |||||||||||    
T  9066196 gactcgagtgaaaacaatacaatatgttcctaaaaacattgacaact 9066150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 315265 - 315185
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| ||||| ||||  |||||||||| || |||| ||||| ||| |  ||||||||||||||||| ||| ||||||||||    
T  315265 aaaactgaataacaataactcgagtgacaataatacaatatattcttcaaaccattgacaactcctctaactctcatctta 315185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 7372601 - 7372672
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataatt 80  Q
    |||| |||||||||| ||||||| ||||||||||| || | |||| |  ||||| ||||||||||| |||||    
T  7372601 aaaattgaattacaacgactcgaatgaaaacaatacaaaaagttcatcaaaccaatgacaactcctctaatt 7372672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 20461691 - 20461746
Alignment:
Q  18 ttacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcc 73  Q
    |||||| ||||||| ||||||||||| ||  |||||||  ||||||||||||||||    
T  20461691 ttacaacgactcgaatgaaaacaatacaaattgttcctcaaaccattgacaactcc 20461746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 14977141 - 14977222
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaa-caatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| |||||||||||||| ||||| |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  14977141 aaaagtgaattacaatgactcgagtgaaaaacaatacaatatgttcctcaaaccattgacaactcctctaactctcatctta 14977222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 28901375 - 28901440
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  28901375 aaaaacgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaactcct 28901440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 12956569 - 12956489
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||| | ||||||||||||||||||| ||||| |||||  ||||||||||||||||| ||| ||||||||||    
T  12956569 aaaagtgaattacgatgactcgagtgaaaacaatacaatattttcctcaaaccattgacaactcctctaactctcatctta 12956489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 16054374 - 16054294
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||||||||||  |||||||||||||||||| || ||||||||| || |||||||||||||| ||| ||| ||||||    
T  16054374 aaaaatgaattacaacaactcgagtgaaaacaatacaaaatgttccttaaatcattgacaactcctctaactcttatctta 16054294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 29047354 - 29047431
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||  ||||||||||||||||||| ||| |||||||   |||||||||||||||| ||| ||||||||||    
T  29047354 aaaattgaattacagtgactcgagtgaaaacaatacaatgtgttcct---accattgacaactcctctaactctcatctta 29047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 5570176 - 5570256
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| ||||||||||  |||||||||||||||||| |||||||||||  ||  |||||||||||||  || ||||||||||    
T  5570176 aaaagtgaattacaacaactcgagtgaaaacaatacaatatgttcctcaaagtattgacaactccttcaaatctcatctta 5570256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 35135457 - 35135522
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    ||||||||||||||| ||||||||| ||||||||| || |||| |||  |||| ||||||||||||    
T  35135457 aaaaatgaattacaatgactcgagtaaaaacaatacaaaatgtacctaaaacctttgacaactcct 35135522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 26882472 - 26882412
Alignment:
Q  25 gactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcat 85  Q
    ||||||||||||||||||| | |||| ||||| |||||||| |||||||| ||| ||||||    
T  26882472 gactcgagtgaaaacaatacattatgctccttaaaccattggcaactcctttaaatctcat 26882412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 32239367 - 32239287
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||| ||| ||||| ||| ||||||||| |||||||| ||  ||||||||||||||||| ||||| | ||||||    
T  32239367 aaaagtgaattgcaacgactcaagtaaaaacaatacaatatgttactcaaaccattgacaactcctctaattattatctta 32239287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 16052317 - 16052388
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcat 85  Q
    ||||||| || |||||||||||||||| || ||||||||  |  ||||||||||||||||| ||| ||||||    
T  16052317 tgaattataacgactcgagtgaaaacattaaaatatgttattcaaaccattgacaactcctctaactctcat 16052388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 28902169 - 28902104
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| ||||||| ||||||||||| |||||||| ||  ||||||| | |||||||    
T  28902169 aaaagtgaattacaacgactcgaatgaaaacaatacaatatgtttctcaaaccattaataactcct 28902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 11310239 - 11310299
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaa 69  Q
    |||||||||||| ||  ||| |||||||||||| | |||||||| ||| ||||||||||||    
T  11310239 aaaaatgaattataacaacttgagtgaaaacaaaaaaatatgtttcttaaaccattgacaa 11310299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 13081977 - 13082052
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||||||||  ||||||||||||||| || ||  |||| ||  || |||||||||||||| ||| ||||||||||    
T  13081977 tgaattacaactactcgagtgaaaacactacaacgtgtttctcaaatcattgacaactcctctaactctcatctta 13082052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 24584759 - 24584830
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataatt 80  Q
    ||||||||||||||| ||||||| ||||||||||| || |  |||||  ||||  ||||||||||| |||||    
T  24584759 aaaaatgaattacaatgactcgaatgaaaacaatacaaaaaattcctcaaaccgatgacaactcctctaatt 24584830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 6e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 13759486 - 13759566
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||||||||| || |||||||||||||||  |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  13759486 aaaattgaattacaacgattcgagtgaaaacaattcaatatgttcctcaaaccattgacaactcctctaactctcatctta 13759566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 16527970 - 16527890
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||||||||||||| |||||||||||||||||||||||||| | ||  |||||  |||||||||| ||| ||||||||||    
T  16527970 aaaaatgaattacaacgactcgagtgaaaacaatataatatggtactcaaaccaccgacaactcctctaactctcatctta 16527890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 15574997 - 15574925
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||| |||| ||||||||||||||||| ||||||| | || ||||||||| |||| ||| ||||||||||    
T  15574997 aattacaacgactagagtgaaaacaatataacatgttcc-tcaaacattgacaattcctctaaatctcatctta 15574925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 2e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 5906771 - 5906834
Alignment:
Q  25 gactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctt 88  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||| ||| |||||||||    
T  5906771 gactcgagtgaaaacaatataatatgttcctcaaaccattgacaattcctctaactctcatctt 5906834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 9783018 - 9783096
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatct 87  Q
    |||| |||||||||| || | |||||||||||||| |||||||||||  ||| ||||||||||||| ||| ||||||||    
T  9783018 aaaactgaattacaatgaattgagtgaaaacaatacaatatgttcctcaaactattgacaactcctctaactctcatct 9783096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 18898065 - 18898011
Alignment:
Q  15 gaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaa 69  Q
    ||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||    
T  18898065 gaattacaacggctcgagtgaaaacaatacaatatgttccttaaaccattgacaa 18898011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 25315273 - 25315346
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||| ||||| ||||||||||||| |||||||||||  || |||||||||||||| ||  ||||||||||    
T  25315273 aattacaacgactcaagtgaaaacaatacaatatgttcctcaaagcattgacaactcctctatctctcatctta 25315346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 27302853 - 27302796
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaact 71  Q
    |||||||||| ||||||||||||||||||| || ||||||||  ||||||||||||||    
T  27302853 tgaattacaatgactcgagtgaaaacaatacaaaatgttcctcaaaccattgacaact 27302796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 1676330 - 1676395
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| ||||||||||  |||||| |||||||| || |||||||||||  |||||||||||||||||    
T  1676330 aaaattgaattacaaaaactcgaatgaaaacattacaatatgttcctcaaaccattgacaactcct 1676395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 1682858 - 1682923
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| ||||||||||  |||||| |||||||| || |||||||||||  |||||||||||||||||    
T  1682858 aaaattgaattacaaaaactcgaatgaaaacattacaatatgttcctcaaaccattgacaactcct 1682923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 12111366 - 12111445
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaa-tataatatgttccttgaaccattgacaactcctataattctcatctt 88  Q
    |||| |||||||||| |||||| ||||||| || || |||||||||||  ||||||||||||||||| | |||||||||||    
T  12111366 aaaagtgaattacaacgactcgtgtgaaaaaaaatacaatatgttcctcaaaccattgacaactcctct-attctcatctt 12111445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 26159838 - 26159767
Alignment:
Q  7 acaaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataa 78  Q
    |||||| | |||||||| ||||||| ||||||||||| || ||||| ||| ||| ||||||||||| |||||    
T  26159838 acaaaactaaattacaacgactcgaatgaaaacaatacaaaatgtttcttaaactattgacaactcttataa 26159767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 22119719 - 22119657
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataa 78  Q
    |||||||| |||||||  ||||||| || ||| |||||||  |||||||||||||||||||||    
T  22119719 aattacaatgactcgaacgaaaacattacaatttgttcctcaaaccattgacaactcctataa 22119657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 34864328 - 34864391
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||| |||||||||| |||  ||||||||||||||| ||| ||||||  |||||||||||||||||    
T  34864328 aaaagtgaattacaatgac--gagtgaaaacaatatgatacgttcctcaaaccattgacaactcct 34864391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9288290 - 9288225
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||||||| || ||||| | ||||||||||| ||| |||||||  ||||||||| |||||||    
T  9288290 aaaaatgaattataatgactcaaatgaaaacaatacaatttgttcctcaaaccattgaaaactcct 9288225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 23353703 - 23353646
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattga 66  Q
    |||| |||||||||| ||||||| ||||||||||| || | ||||||| |||||||||    
T  23353703 aaaattgaattacaacgactcgaatgaaaacaatacaaaaagttccttaaaccattga 23353646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 4953741 - 4953697
Alignment:
Q  30 gagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||||||||| |||||||||||  ||||||| |||||||||    
T  4953741 gagtgaaaacaatacaatatgttcctcaaaccattaacaactcct 4953697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 20044253 - 20044193
Alignment:
Q  14 tgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||||| ||||||| |||||||||||||| ||||  || |||||||  |||||||||    
T  20044253 tgaattacaatgactcgaatgaaaacaatataaaatgtctctcgaaccatgaacaactcct 20044193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 10320254 - 10320297
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgtt 52  Q
    |||| |||||||||| |||||||||||||| |||| ||||||||    
T  10320254 aaaagtgaattacaacgactcgagtgaaaagaatacaatatgtt 10320297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 30998851 - 30998771
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| |||| ||||| ||||| ||||||||||||| |||||||||||  ||||||||||||||| | ||| ||||||||||    
T  30998851 aaaactgaagtacaacgactcaagtgaaaacaatacaatatgttcctcaaaccattgacaactcatctaactctcatctta 30998771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35031773 - 35031702
Alignment:
Q  18 ttacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||| ||||||||||||||||||| |||||||||||  ||||||| ||||||||| ||  ||||||||||    
T  35031773 ttacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattaacaactcctctatctctcatctta 35031702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 21844671 - 21844729
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||| ||||||| |||||||||||||| ||||||||  |||||||||||||||||    
T  21844671 aattacaatgactcgaatgaaaacaatataacatgttcctaaaaccattgacaactcct 21844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 21505181 - 21505254
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    ||||| || ||||||||||||||||||| |||||| ||||  |||||||||||||| || ||| ||||||||||    
T  21505181 aattataaagactcgagtgaaaacaatacaatatgctcctcaaaccattgacaactactctaactctcatctta 21505254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 24047462 - 24047402
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaa 69  Q
    |||| |||||||||| ||||||| ||||||||||| || ||||||||| ||||||||||||    
T  24047462 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttccttaaaccattgacaa 24047402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 16593785 - 16593867
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataata--tgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| ||||||| ||  |||||||||||||||||||||||  ||||| |  ||||||||||||||||||||| ||| ||||||    
T  16593785 aaaactgaattaaaacaactcgagtgaaaacaatataatatgtgttcatcaaaccattgacaactcctataactctaatctta 16593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 21843044 - 21843102
Alignment:
Q  16 aattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 74  Q
    |||||||| ||||||| ||||||||||| || ||||||||  |||||||| ||||||||    
T  21843044 aattacaatgactcgaatgaaaacaatacaacatgttcctaaaaccattggcaactcct 21843102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15829205 - 15829136
Alignment:
Q  18 ttacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatct 87  Q
    |||||| ||||  ||||||||||||| |||  ||||||  ||||||||||||||||| ||| ||||||||    
T  15829205 ttacaacgacttaagtgaaaacaatacaatgcgttcctcaaaccattgacaactcctctaactctcatct 15829136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 35707883 - 35707803
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||| ||||||||||  | || ||||||||||||| || ||||| ||  |||||||||||||| || ||| ||||||||||    
T  35707883 aaaactgaattacaacaaatcaagtgaaaacaatacaacatgtttctcaaaccattgacaacttctctaactctcatctta 35707803  T

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Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 25474096 - 25474037
Alignment:
Q  30 gagtgaaaacaatataatatgttccttgaaccattgacaactcctataattctcatctta 89  Q
    |||||||| ||||  |||||||||||  ||| ||||||||||||| ||| ||||||||||    
T  25474096 gagtgaaaccaattcaatatgttcctcaaacaattgacaactcctctaactctcatctta 25474037  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 21477 - 21431
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttcct 55  Q
    |||| |||||||||| ||||||||||||||||||| |||| ||||||    
T  21477 aaaagtgaattacaacgactcgagtgaaaacaatacaataagttcct 21431  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 228219 - 228264
Alignment:
Q  9 aaaaatgaattacaaggactcgagtgaaaacaatataatatgttcc 54  Q
    ||||||||||||||| ||||||| |||||||||| ||| |||||||    
T  228219 aaaaatgaattacaacgactcgaatgaaaacaatttaaaatgttcc 228264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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