View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9101J-LTR4-TNT-insertion-1 (Length: 413)
Name: F9101J-LTR4-TNT-insertion-1
Description: F9101J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9101J-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 53477986 - 53478379
Alignment:
| Q |
11 |
caatttgtaggtgtgattagacagaattagagtttttcaagtgtagtttgacatgcttctatcattatgttttacatcaatgacttattcagtgattttc |
110 |
Q |
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| T |
53477986 |
caatttgtaggtgtgattagacagaattagagtttttcaagtgtagtttgacatgcttctatcattatgttttacatcaatgacttattcagtgattttc |
53478085 |
T |
|
| Q |
111 |
gtaggaacgtcttccacttctcacgatcaatccacttagttaaacgcatgaagaaaaataacattataagaattgtctcgttagggagaaattgaaagaa |
210 |
Q |
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| T |
53478086 |
gtaggaacgtcttccacttctcacgatcaatccacttagttaaacgcatgaagaaaaataacattataagaattgtctcgttagggagaaattgaaagaa |
53478185 |
T |
|
| Q |
211 |
aaataccgaattgaataaagaattacaagaccacaattttattcaaatgattccaagtttaactaaaacatatgatagcttaacacaaataatgacctca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478186 |
aaataccgaattgaataaagaattacaagaccacaattttattcaaatgattccaagtttaactaaaacatatgatagcttaacacaaataatgacctca |
53478285 |
T |
|
| Q |
311 |
aaattaagacgttgaaaacctacatatggaagagttatcaatcaatgaaacatttttgttgaatattaagtcaccatgtgagactcttcaattg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478286 |
aaattaagacgttgaaaacctacatatggaagagttatcaatcaatgaaacatttttgttgaatattaagtcaccatgtgagactcttcaattg |
53478379 |
T |
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