View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9101J-LTR4-TNT-insertion-2 (Length: 397)
Name: F9101J-LTR4-TNT-insertion-2
Description: F9101J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9101J-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 49807572 - 49807951
Alignment:
| Q |
8 |
aaggtgtggaatttgagaaggaggagaggtgttgctggagagaatgaaaaggagttgaaaattgatgagaaaaaacctatcggttcgtcgccgttaagga |
107 |
Q |
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| T |
49807572 |
aaggtgtggaatttgagaaggaggagaggtgttgctggagagaatgaaaaggagttgaaaattgatgagaaaaaacctatcggttcgtcgccgttaagga |
49807671 |
T |
|
| Q |
108 |
atggtaacggcgttggtaagttaagaggtggtggttctcctgagaagaaggtgaaattttctttgtcattgatgaagaaggagattgaagaagatttcat |
207 |
Q |
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| T |
49807672 |
atggtaacggcgttggtaagttaagaggtggtggttctcctgagaagaaggtgaaattttctttgtcattgatgaagaaggagattgaagaagatttcat |
49807771 |
T |
|
| Q |
208 |
cacgatgactggtcaaaagcctcatagaaggcccaaaaagagacctagaaatgttcagaagcaaatggatgtaagttgatttaattagtactaactacta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49807772 |
cacgatgactggtcaaaagcctcatagaaggcccaaaaagagacctagaaatgttcagaagcaaatggatgtaagttgatttaattagtactaactacta |
49807871 |
T |
|
| Q |
308 |
atcctaatttttaatttcattttgattgtaatgttcatttgtgcagaccctttttcctggtatgtggttgtctgagatta |
387 |
Q |
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| T |
49807872 |
atcctaatttttaatttcattttgattgtaatgttcatttgtgcagaccctttttcctggtatgtggttgtctgagatta |
49807951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 49800067 - 49800215
Alignment:
| Q |
127 |
gttaagaggtggtggttctcctgagaagaagg---tgaaattttctttgtcattgatgaagaaggagattgaagaagatttcatcacgatgactggtcaa |
223 |
Q |
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| T |
49800067 |
gttaaaaggtggtggttctactgagaagaagacgatgaagttttctttgtcgttaacaaagaaggagattgaggaagatttcatcaagatgacaggtcaa |
49800166 |
T |
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| Q |
224 |
aagcctcatagaaggcccaaaaagagacctagaaatgttcagaagcaaa |
272 |
Q |
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||||||| |||||||||||||| | |||||| ||||||||||||||||| |
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| T |
49800167 |
aagcctcctagaaggcccaaaaggggacctaaaaatgttcagaagcaaa |
49800215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 36171977 - 36171808
Alignment:
| Q |
127 |
gttaagaggtggtggttctcctgagaagaagg---tgaaattttctttgtcattgatgaagaaggagattgaagaagatttcatcacgatgactggtcaa |
223 |
Q |
| |
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||||| ||||||||||||| |||||||||||| |||| ||||||||||| |||| |||||||||||||| ||||||||||||| ||||| |||||| |
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| T |
36171977 |
gttaaaaggtggtggttctactgagaagaaggcgatgaagttttctttgtcgttgacaaagaaggagattgaggaagatttcatcaaaatgacaggtcaa |
36171878 |
T |
|
| Q |
224 |
aagcctcatagaaggcccaaaaagagacctagaaatgttcagaagcaaatggatgtaagttgatttaatt |
293 |
Q |
| |
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| T |
36171877 |
aagcctcctagaaggcccaaaaggagacctaaaaatgttcagaagcaaatgaatgtaagttgattcaatt |
36171808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 36172048 - 36171993
Alignment:
| Q |
29 |
aggagaggtgttgctggagagaatgaaaaggagttgaaaattgatgagaaaaaacc |
84 |
Q |
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|||||||||||||||||||||| | ||||| |||||| ||||||||||||||||| |
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| T |
36172048 |
aggagaggtgttgctggagagaccggaaaggggttgaagattgatgagaaaaaacc |
36171993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 2374216 - 2374047
Alignment:
| Q |
127 |
gttaagaggtggtggttctcctgagaagaagg---tgaaattttctttgtcattgatgaagaaggagattgaagaagatttcatcacgatgactggtcaa |
223 |
Q |
| |
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||||| |||||| |||||| |||||||||||| |||| ||||||||||| |||| |||||||||||||| ||||||||||||| |||||| |||||| |
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| T |
2374216 |
gttaaaaggtggcggttctactgagaagaaggcgatgaagttttctttgtcgttgacaaagaaggagattgaggaagatttcatcaagatgacaggtcaa |
2374117 |
T |
|
| Q |
224 |
aagcctcatagaaggcccaaaaagagacctagaaatgttcagaagcaaatggatgtaagttgatttaatt |
293 |
Q |
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| T |
2374116 |
atgcctcccagaaggcccaaaaggagatctaaaaatgttcagaagaaaatgaatgtaagttgattcaatt |
2374047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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