View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9101J-LTR4-TNT-insertion-6 (Length: 57)
Name: F9101J-LTR4-TNT-insertion-6
Description: F9101J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9101J-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 43; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 52050030 - 52050072
Alignment:
| Q |
8 |
gttattaatttcgagcaaattatcgagtccattatattgaatt |
50 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050030 |
gttattaatttcgagcaaattatcgagtccattatattgaatt |
52050072 |
T |
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