View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9105J-LTR4-TNT-insertion-2 (Length: 371)
Name: F9105J-LTR4-TNT-insertion-2
Description: F9105J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9105J-LTR4-TNT-insertion-2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Original strand, 28750112 - 28750468
Alignment:
| Q |
7 |
aacattaaattaaaactaaatgtttggactcattctcatcttatagttcattcatagaaaagatatatgtcatgcaatgcaaacaaatatttcaatgcaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28750112 |
aacattaaattaaaactaaatgtttggactcattctcatcttatagttcattcatagaaaagatatatgtcatgcaatgcaaacaaatatttcaatgcaa |
28750211 |
T |
|
| Q |
107 |
aattcaaataattaagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaacc |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28750212 |
aattcaaataattaagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaacc |
28750311 |
T |
|
| Q |
207 |
aagactcttaacgtcattggcactgtcaaattctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaacccacctacacaaaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28750312 |
aagactcttaacgtcattggcactgtcaaattctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaacccacctacacaaaca |
28750411 |
T |
|
| Q |
307 |
aatcaagtaaaatacttgtcaaaaacaaacaagatcattgtatcatcactgcaatta |
363 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28750412 |
aatcaagtaaaatatttgtcaaaaacaaacaagatcattgtatcatcactgcaatta |
28750468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 120 - 351
Target Start/End: Original strand, 28740453 - 28740684
Alignment:
| Q |
120 |
aagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacg |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28740453 |
aagttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagaatcttaaca |
28740552 |
T |
|
| Q |
220 |
tcattggcactgtcaaattctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaacccacctacacaaacaaatcaagtaaaat |
319 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
28740553 |
tcattggaaccatcaaattctggaatttgttttgcaatagttggagtcattccaaacaagtagctaccaaatccacctacacgagcaaatcaagtaaaat |
28740652 |
T |
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| Q |
320 |
acttgtcaaaaacaaacaagatcattgtatca |
351 |
Q |
| |
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| ||||| | |||||| ||| ||||||||||| |
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| T |
28740653 |
atttgtcgacaacaaataaggtcattgtatca |
28740684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 160 - 312
Target Start/End: Complemental strand, 51122775 - 51122623
Alignment:
| Q |
160 |
ccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacgtcattggcactgtcaaattctggaatttgttttgcaatag |
259 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||||||||| |
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|
| T |
51122775 |
ccaagaaagctaacaacaaataaaaatgcaatcatccatcctaaatcaagactcttaacatcattgacagtgtcaaattctggaatttgttttgcaatag |
51122676 |
T |
|
| Q |
260 |
ttggactcattccaaacaagtagctaccaaacccacctacacaaacaaatcaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
51122675 |
ttggactcattccaaacaagtagctaccaaacccacctacacaaaaaaatcaa |
51122623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 121 - 363
Target Start/End: Complemental strand, 39942518 - 39942277
Alignment:
| Q |
121 |
agttagtgtacctttcggagtggaagcactgaaaagagaccaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacgt |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39942518 |
agttagtgtacctttcggagtggaaccactgaaaagagaccaagaaagctgacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacat |
39942419 |
T |
|
| Q |
221 |
cattggcactgtcaaattctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaacccacctacacaaacaaatcaagtaaaata |
320 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
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|
| T |
39942418 |
cattggcagtgccagcttctggaatttgttttgcaatagttggactcattccaaacaagtagctaccaaacccacctacacaagcaaat-aagtaaaaga |
39942320 |
T |
|
| Q |
321 |
cttgtcaaaaacaaacaagatcattgtatcatcactgcaatta |
363 |
Q |
| |
|
||||||| |||||| || ||||||||||| |||||||||| |
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|
| T |
39942319 |
tttgtcaacaacaaatgaggtcattgtatcagaactgcaatta |
39942277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 159 - 351
Target Start/End: Original strand, 34947074 - 34947266
Alignment:
| Q |
159 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacgtcattggcactgtcaaattctggaatttgttttgcaata |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||| |||||||||||| |||||||||||||||| |
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|
| T |
34947074 |
accaagaaagctaacaacaaatagaaatccaatcatccatcctaaacaaagactcttaacatcattagcagtgtcaaattctgaaatttgttttgcaata |
34947173 |
T |
|
| Q |
259 |
gttggactcattccaaacaagtagctaccaaacccacctacacaaacaaatcaagtaaaatacttgtcaaaaacaaacaagatcattgtatca |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||| ||| ||||| ||||| |
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| T |
34947174 |
gttggactcattccaaacaagtagctaccaaacccacctacacaaaaaaatcaagtaaaagacatgtcaacaacaaataaggtcattatatca |
34947266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 30013204 - 30013090
Alignment:
| Q |
159 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacgtcattggcactgtcaaattctggaatttgttttgcaata |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30013204 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagattcttaacatcattggcagtgtcaaattctggaatttgttttgcaata |
30013105 |
T |
|
| Q |
259 |
gttggactcattcca |
273 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30013104 |
gttggactcattcca |
30013090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 30072929 - 30072815
Alignment:
| Q |
159 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagactcttaacgtcattggcactgtcaaattctggaatttgttttgcaata |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30072929 |
accaagaaagctaacaacaaatagaaatgcaatcatccatcctaaaccaagattcttaacatcattggcagtgtcaaattctggaatttgttttgcaata |
30072830 |
T |
|
| Q |
259 |
gttggactcattcca |
273 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30072829 |
gttggactcattcca |
30072815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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