View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9119J-LTR4-TNT-insertion-12 (Length: 164)
Name: F9119J-LTR4-TNT-insertion-12
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 144; Significance: 5e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 30670204 - 30670351
Alignment:
| Q |
9 |
tttggtagtattcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30670204 |
tttggtagtattcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
30670303 |
T |
|
| Q |
109 |
ccaacctcgctggattgcaagtgtttgataaatcatctaataatatta |
156 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30670304 |
ccaacctcactggattgcaagtgtttgataaatcatctaataatatta |
30670351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 30633795 - 30633940
Alignment:
| Q |
9 |
tttggtagtattcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30633795 |
tttggtagtattccatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
30633894 |
T |
|
| Q |
109 |
ccaacctcgctggattgcaagtgtttgataaatcatctaataatat |
154 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
30633895 |
ccaacctcactggattgcaagcgtttgatatagcatctaataatat |
30633940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 30661524 - 30661671
Alignment:
| Q |
9 |
tttggtagtattcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30661524 |
tttggtagtattccatcaaatatagatctagtttttcccaatcttgaacaattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
30661623 |
T |
|
| Q |
109 |
ccaacctcgctggattgcaagtgtttgataaatcatctaataatatta |
156 |
Q |
| |
|
|||||||| || |||||||||||||||||| | | | ||||||||||| |
|
|
| T |
30661624 |
ccaacctcactcgattgcaagtgtttgatatagcttataataatatta |
30661671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 30659466 - 30659586
Alignment:
| Q |
18 |
attcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatatccaacctcg |
117 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30659466 |
attccatcaaatatagatctagtttttcccaatcttgaacaattctttataggatccaagcaaattagcgcaacttttccgtcttcaatatccaacctca |
30659565 |
T |
|
| Q |
118 |
ctggattgcaagtgtttgata |
138 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
30659566 |
ctggattgcaagagtttgata |
30659586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 30659369 - 30659464
Alignment:
| Q |
18 |
attcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatatccaac |
113 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30659369 |
attccatcaaatatagatctagtttttcccaatcttgaacaattctttataggatccaagcaaattagcgcaacttttccgtcttcaatatccaac |
30659464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 10411655 - 10411512
Alignment:
| Q |
9 |
tttggtagtattcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatat |
108 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||| |||||||| | | |||||| ||||||||| ||| | | |||||||||||| ||| |
|
|
| T |
10411655 |
tttggtagtattccatcaaatataaatctcgcctttccccatcttgaaaaacacgcgataggaaataaccaaataagcagagcatttccgtcttcattat |
10411556 |
T |
|
| Q |
109 |
ccaacctcgctggattgcaagtgtttgataaatcatctaataat |
152 |
Q |
| |
|
|||||||| ||| |||||| ||||||||| | ||| ||||||| |
|
|
| T |
10411555 |
ccaacctcactgagttgcaattgtttgatataccatataataat |
10411512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 35753394 - 35753462
Alignment:
| Q |
84 |
agcgcaacttttccgtcttcaatatccaacctcgctggattgcaagtgtttgataaatcatctaataat |
152 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||| |||| | | |||||||| ||||| ||||||| |
|
|
| T |
35753394 |
agcggaacttttccgtcttcaatatcaaacctcactgaattggatgcgtttgatatatcatataataat |
35753462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 35374974 - 35375049
Alignment:
| Q |
75 |
aaccaaattagcgcaacttttccgtcttcaatatccaacctcgctggattgcaagtgtttgataaatcatctaata |
150 |
Q |
| |
|
|||||||| |||| | ||||||||| |||| ||||||||||| ||| |||| || ||||||||| ||||| ||||| |
|
|
| T |
35374974 |
aaccaaataagcggaccttttccgttttcagtatccaacctcactgaattgaaaatgtttgatatatcatataata |
35375049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 35405119 - 35405203
Alignment:
| Q |
42 |
tttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatatccaacctcgctggattgc |
126 |
Q |
| |
|
||||||||||||||| ||| | | ||||| ||||||||| || | || |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
35405119 |
tttcccaatcttgaagtattttatgtaggaggtaaccaaataagtggaatttttccatcttcaatatccaaccttactggattgc |
35405203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 13563870 - 13563986
Alignment:
| Q |
12 |
ggtagtattcaatcaaatatagatctcgtttttcccaatcttgaacgattctttataggatctaaccaaattagcgcaacttttccgtcttcaatatcca |
111 |
Q |
| |
|
|||||| ||| |||||||| ||||| | |||||| ||||||||| |||||| | ||| |||||||| | | |||||||||||||||||| |||| |
|
|
| T |
13563870 |
ggtagtcttccatcaaatacggatcttgattttccaaatcttgaataattcttggtcggagagaaccaaataacgggaacttttccgtcttcaatctcca |
13563969 |
T |
|
| Q |
112 |
acctcgctggattgcaa |
128 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
13563970 |
acctcactgaattgcaa |
13563986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8744 times since January 2019
Visitors: 8185