View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9119J-LTR4-TNT-insertion-3 (Length: 471)
Name: F9119J-LTR4-TNT-insertion-3
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 10122817 - 10123271
Alignment:
| Q |
10 |
tggtctccagcagcagccggaaacatgaagttcaatattctatcaggaacttctacgtcttgtcctcatgtaactggcattgcagccttaatcaaagctg |
109 |
Q |
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| T |
10122817 |
tggtctccagcagcagccggaaacatgaagttcaatattctatcaggaacttctatgtcttgtcctcatgtaactggcattgcagccttaatcaaagctg |
10122916 |
T |
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| Q |
110 |
tacatccttcatggtctccatctgctatcaaatctgccatcatgactactggtattacacattatctagaacttgtattactcattgtggtttatttgag |
209 |
Q |
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| T |
10122917 |
tacatccttcatggtctccatctgctatcaaatctgccatcatgactactggtattacacattatctagaacttgtattactcattgtggtttatttgag |
10123016 |
T |
|
| Q |
210 |
attcttcacaatcagacatccaagtaaagctccctaatagattagatttaatctaaaggaactaatcatataattcaatatgcagcaacgattgtggata |
309 |
Q |
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| T |
10123017 |
attcttcacaatcagacatccaagtaaagctccctaatagattagatttaatctaaaggaactaatcatataattcaatatgcagcaacgattgtggata |
10123116 |
T |
|
| Q |
310 |
agaaaaacgaaccaattagagcggatcctgatagaagaagggctgatgcatttgattatggatcagggtttgtgaatcctgcaggagctctggatcctgg |
409 |
Q |
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| T |
10123117 |
agaaaaacgaaccaattagagcggatcctgatagaagaagggctgatgcatttgattatggatcagggtttgtgaatcctgcaggagctctggatcctgg |
10123216 |
T |
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| Q |
410 |
tcttgtatatgattcacagtcggaagattttgttgcattcctgtgttcaattggt |
464 |
Q |
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| T |
10123217 |
tcttgtatatgattcacagtcggaagattttgttgcattcctgtgttcaattggt |
10123271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 30626703 - 30626574
Alignment:
| Q |
39 |
gttcaatattctatcaggaacttctacgtcttgtcctcatgtaactggcattgcagccttaatcaaagctgtacatccttcatggtctccatctgctatc |
138 |
Q |
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|||||| ||||| ||||||||||| | | ||||||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
30626703 |
gttcaacattctgtcaggaacttccatggcttgtcctcatgtaactggaattgcaaccttagtcaaagctgttcatccttcatggtctccatctgctatc |
30626604 |
T |
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| Q |
139 |
aaatctgccatcatgactactggtattaca |
168 |
Q |
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| T |
30626603 |
aagtcggccatcatgacaactggtattaca |
30626574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 2469143 - 2469215
Alignment:
| Q |
96 |
cttaatcaaagctgtacatccttcatggtctccatctgctatcaaatctgccatcatgactactggtattaca |
168 |
Q |
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| T |
2469143 |
cttagtcaaagctgtccatccttcatggtctccatctgatatcaaatctgtcatcatgacaactggtattaca |
2469215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 30626206 - 30626141
Alignment:
| Q |
347 |
aagggctgatgcatttgattatggatcagggtttgtgaatcctgcaggagctctggatcctggtct |
412 |
Q |
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||||||| |||||||||||||||||||||||||| |||| |||||| ||| ||| ||||||||||| |
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| T |
30626206 |
aagggctaatgcatttgattatggatcagggtttttgaaccctgcaagagttcttgatcctggtct |
30626141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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