View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9119J-LTR4-TNT-insertion-5 (Length: 465)
Name: F9119J-LTR4-TNT-insertion-5
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9119J-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 7 - 455
Target Start/End: Original strand, 44011144 - 44011592
Alignment:
| Q |
7 |
aacaacatcatgctatatttaagtacaaaatctagatcagttctttgtgcactgtttttactgttatctaattacaattcaacacatggaccgtgtatgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011144 |
aacaacatcatgctatatttaagtacaaaatctagatcagttctttgtgcactgtttttactgttatctaattacaattcaacacatggaccgtgtatgt |
44011243 |
T |
|
| Q |
107 |
aatagtataaactgaatcggtttaagtttaaatttaattgaaaaatttaaaccgcgtgacaaattataattggggaacaacacggatagtatccattgag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011244 |
aatagtataaactgaatcggtttaagtttaaatttaattgaaaaatttaaaccgcgtgacaaattataattggggaacaacacggatagtatccattgag |
44011343 |
T |
|
| Q |
207 |
taggacctaagttttgtattatttttaagtatgtaacatgtaatatgtgacagaaaagtgtagcaagttttgattctgcttactgtgagagataggattc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011344 |
taggacctaagttttgtattatttttaagtatgtaacatgtaatatgtgacagaaaagtgtagcaagttttgattctgcttactgtgagagataggattc |
44011443 |
T |
|
| Q |
307 |
ctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattgaagtataacaggtttactgatggtggattaactccctttgctaagtgcccaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011444 |
ctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattgaagtataacaggtttactgatggtggattaactccctttgctaagtgcccaat |
44011543 |
T |
|
| Q |
407 |
ctgcagcaaaatacacagagaatcagtcagttattactacttttgatta |
455 |
Q |
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| T |
44011544 |
ctgcagcaaaatacacagagaatcagtcagttattactacttttgatta |
44011592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 3175862 - 3175753
Alignment:
| Q |
284 |
gcttactgtgagagataggattcctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattgaagtataacaggtttactgatggtggatta |
383 |
Q |
| |
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|||||| |||||||| | |||||| ||||||| || |||||||||||||||||||| | |||||| |||||||||||| |||| ||||||||||||| |
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| T |
3175862 |
gcttacagtgagagacaagattccagtgacaagtccagttttgatagcaagagccaaatgtggaccactgaagtataacatgtttgatgatggtggatta |
3175763 |
T |
|
| Q |
384 |
actccctttg |
393 |
Q |
| |
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| |||||||| |
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| T |
3175762 |
agtccctttg |
3175753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 455
Target Start/End: Original strand, 22377006 - 22377104
Alignment:
| Q |
355 |
agtataacaggtttactgatggtggattaactccctttgctaagtgcccaatctgcagcaaaatacacagagaatcagtcagttattactacttttgatt |
454 |
Q |
| |
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||||||||| |||||| |||||||||||||||| ||||| |||||| || ||||||| ||||||||| | ||||| ||| |||||||| ||||||||| |
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| T |
22377006 |
agtataacatgtttaccgatggtggattaactcactttgttaagtggccgatctgcaagaaaatacac--ataatcaatcaattattactgcttttgatt |
22377103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 455
Target Start/End: Complemental strand, 30734019 - 30733921
Alignment:
| Q |
355 |
agtataacaggtttactgatggtggattaactccctttgctaagtgcccaatctgcagcaaaatacacagagaatcagtcagttattactacttttgatt |
454 |
Q |
| |
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||||||||| |||||| |||||||||||||||| ||||| |||||| || ||||||| ||||||||| | ||||| ||| |||||||| ||||||||| |
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| T |
30734019 |
agtataacatgtttaccgatggtggattaactcactttgttaagtggccgatctgcaagaaaatacac--ataatcaatcaattattactgcttttgatt |
30733922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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