View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9119J-LTR4-TNT-insertion-8 (Length: 131)

Name: F9119J-LTR4-TNT-insertion-8
Description: F9119J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9119J-LTR4-TNT-insertion-8
F9119J-LTR4-TNT-insertion-8
[»] chr7 (3 HSPs)
chr7 (9-121)||(38666809-38666921)
chr7 (9-121)||(38674560-38674672)
chr7 (9-121)||(38668750-38668862)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 3e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 38666809 - 38666921
Alignment:
9 cattgtcattgaattattatcaatggtcttggggtcatggacttattttgcaatcacttccaaatggtaatgcacctggatcaggaggaggagatcctac 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38666809 cattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaatgcacctggatcaggaggaggagatcctac 38666908  T
109 tcatccctaatta 121  Q
    |||||||||||||    
38666909 tcatccctaatta 38666921  T

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Target: chr7; HSP #2
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 38674560 - 38674672
Alignment:
9 cattgtcattgaattattatcaatggtcttggggtcatggacttattttgcaatcacttccaaatggtaatgcacctggatcaggaggaggagatcctac 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38674560 cattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaatgcacctggatcaggaggaggagatcctac 38674659  T
109 tcatccctaatta 121  Q
    |||||||||||||    
38674660 tcatccctaatta 38674672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 38668862 - 38668750
Alignment:
9 cattgtcattgaattattatcaatggtcttggggtcatggacttattttgcaatcacttccaaatggtaatgcacctggatcaggaggaggagatcctac 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
38668862 cattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaaagcacctggatcaagaggaggagatcctac 38668763  T
109 tcatccctaatta 121  Q
    |||||||||||||    
38668762 tcatccctaatta 38668750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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