View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9140J-LTR4-TNT-insertion-7 (Length: 121)
Name: F9140J-LTR4-TNT-insertion-7
Description: F9140J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9140J-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 37154532 - 37154426
Alignment:
| Q |
7 |
agaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtccaaagtccaatgataacagctgaatttccaacaaccataatggcaaatg |
106 |
Q |
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| T |
37154532 |
agaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtccaaagtccaatgataacagctgaatttccaacaaccataatggcaaatg |
37154433 |
T |
|
| Q |
107 |
caattgg |
113 |
Q |
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||||||| |
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| T |
37154432 |
caattgg |
37154426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 37199887 - 37199781
Alignment:
| Q |
7 |
agaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtccaaagtccaatgataacagctgaatttccaacaaccataatggcaaatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199887 |
agaaagtacaaccttgctacacaatagtatgtccaaaatacatgtgcagtccaaagtccaatgataacagctgaatttccaacaaccataatggcaaatg |
37199788 |
T |
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| Q |
107 |
caattgg |
113 |
Q |
| |
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||||||| |
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|
| T |
37199787 |
caattgg |
37199781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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