View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9164J-LTR4-TNT-insertion-1 (Length: 769)
Name: F9164J-LTR4-TNT-insertion-1
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-1 |
 | |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 758; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 8 - 769
Target Start/End: Complemental strand, 35709295 - 35708534
Alignment:
| Q |
8 |
attaagaaccaaagataaacatcacatttgattattcatatataccaaactaggtttaaatggatatgctgtatgggactccttttccagtgactccagg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35709295 |
attaagaaccaaagataaacatcacatttgattattcatatataccaaactaggtttaaatggatatgctgtatgggactccttttccagtgactccagg |
35709196 |
T |
|
| Q |
108 |
ccctgaaaatggctttaaagactcataaggcattatcccagctccatttctattcttcaaattcttgtttttattccttgagtctataataccttcaatc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35709195 |
ccctgaaaatggctttaaagactcataaggcattatcccagctccatttctattcttcaaattcttgtttttattccttgagtctataataccttcaatc |
35709096 |
T |
|
| Q |
208 |
tctttcaatctcctatgaaatctttcaaaagctgcttttatagttggattctcaccccaagatggctctattttttgtccaatatactcttcatctgctg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35709095 |
tctttcaatctcctatgaaatctttcaaaagctgcttttatagttggattctcaccccaagatggctctattttttgtccaatatactcttcatctgctg |
35708996 |
T |
|
| Q |
308 |
aatgctctgataatatgttcattataaccgtaaacaaggttgcttgaatttgtgatggaaagcactccaaaagtgtttgttctggtttgttaataaattt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708995 |
aatgctctgataatatgttcattataaccgtaaacaaggttgcttgaatttgtgatggaaagcactccaaaagtgtttgttctggtttgttaataaattt |
35708896 |
T |
|
| Q |
408 |
ttcccattcttccttggtagggtcttctgttggcattttgtttcttgcaattgttggtctattaggaaaaaagcctatataagcatattgtgtgaagttc |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708895 |
ttcccattcttccttggtagggtcttctgttggcattttgtttcttgcaattgttggtctattaggaaaaaagcctatataagcatattgtgtgaagttc |
35708796 |
T |
|
| Q |
508 |
acagctgcatgatgagcagaggctatccaagttatagtagtgatgatatcagtaagatctttttgtgttttgagatttggccaccatggttcttcagatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708795 |
acagctgcatgatgagcagaggctatccaagttatagtagtgatgatatcagtaagatctttttgtgttttgagatttggccaccatggttcttcagatt |
35708696 |
T |
|
| Q |
608 |
tgtctgcatgtcccactgttcgaatttctgtccaccatgcttggagctcttgatcagactctacaatgctcgagcttggatagtaatgattgacataatc |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708695 |
tgtctgcatgtcccactgttcgaatttctgtccaccatgcttggagctcttgatcagactctacaatgctcgagcttggatagtaatgattgacataatc |
35708596 |
T |
|
| Q |
708 |
tgtcacccattgtttgattgcatcccatattagaagaccatcattggcaaaaaggtagtctt |
769 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35708595 |
tgtcacccattgtttgattgcatcccatattagaagaccatcattggcaaaagggtagtctt |
35708534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 50 - 769
Target Start/End: Complemental strand, 35725156 - 35724437
Alignment:
| Q |
50 |
taccaaactaggtttaaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaaagactcataaggcattatcccagc |
149 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
35725156 |
taccacactaggtttaaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaaggactcataaggcacaataccagc |
35725057 |
T |
|
| Q |
150 |
tccatttctattcttcaaattcttgtttttattccttgagtctataataccttcaatctctttcaatctcctatgaaatctttcaaaagctgcttttata |
249 |
Q |
| |
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||||| ||||||||||| |||| | | || ||||||||||||||||||||||||||| || ||||||||||| || || ||||||||||||| |||||| |
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| T |
35725056 |
tccatgtctattcttcatattcctatcttcattccttgagtctataataccttcaatttcattcaatctcctttgtaacttttcaaaagctgcctttata |
35724957 |
T |
|
| Q |
250 |
gttggattctcaccccaagatggctctattttttgtccaatatactcttcatctgctgaatgctctgataatatgttcattataaccgtaaacaaggttg |
349 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| || ||||||||| |||| | || | |||| ||||||| |
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| T |
35724956 |
gttgaattctcaccccaagatggctctattttttgtccaatgtactcttcatcgggtgaatgttccgataatatgctcataacaatcataaataaggttg |
35724857 |
T |
|
| Q |
350 |
cttgaatttgtgatggaaagcactccaaaagtgtttgttctggtttgttaataaatttttcccattcttccttggtagggtcttctgttggcattttgtt |
449 |
Q |
| |
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||||||||||||||||||| || |||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
35724856 |
cttgaatttgtgatggaaaacattccaaaagtgtttgctctggatggttcataaatttttcccattcttccttagtagggtcttctgtaggcattttctt |
35724757 |
T |
|
| Q |
450 |
tcttgcaattgttggtctattaggaaaaaagcctatataagcatattgtgtgaagttcacagctgcatgatgagcagaggctatccaagttatagtagtg |
549 |
Q |
| |
|
||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||| |||||| || |
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|
| T |
35724756 |
tctagcaatggttggtctattagggaaaaagcctatataagcatattgtgtaaagttcacagctgaatgatgagcagatgctgtccaagctatagtggta |
35724657 |
T |
|
| Q |
550 |
atgatatcagtaagatctttttgtgttttgagatttggccaccatggttcttcagatttgtctgcatgtcccactgttcgaatttctgtccaccatgctt |
649 |
Q |
| |
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||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35724656 |
atgatgttaataagatcattttgtgttttgagatttggccaccatggttcttcagatttgtccgcatgtcccactgttcgaatttctgtccaccatgctt |
35724557 |
T |
|
| Q |
650 |
ggagctcttgatcagactctacaatgctc-gagcttggatagtaatgattgacataatctgtcacccattgtttgattgcatcccatattagaagaccat |
748 |
Q |
| |
|
|||||||||||||||| |||| | | ||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
35724556 |
ggagctcttgatcagattctatagt-ctctgagcttggatagtaatgattgacatattctgtgacccattgtttaattgcatcccatattagaagaccat |
35724458 |
T |
|
| Q |
749 |
cattggcaaaaaggtagtctt |
769 |
Q |
| |
|
||||||||||| ||||||||| |
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| T |
35724457 |
cattggcaaaagggtagtctt |
35724437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 64 - 769
Target Start/End: Original strand, 35725585 - 35726290
Alignment:
| Q |
64 |
taaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaaagactcataaggcattatcccagctccatttctattct |
163 |
Q |
| |
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||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||| || | |||||| |||| ||||||||||||||| ||||| | |
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| T |
35725585 |
taaatagatatgctatatggaactccttttccagtgactccaggtcctgaaaatggtttcattagctcatatggcactatcccagctccattcctatttt |
35725684 |
T |
|
| Q |
164 |
tcaaattcttgtttttattccttgagtctataataccttcaatctctttcaatctcctatgaaatctttcaaaagctgcttttatagttggattctcacc |
263 |
Q |
| |
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| ||||| | ||| ||| ||||||||||| ||| ||||||| || |||||||||| || ||| |||||||| ||| | ||||||| |||||||||| | |
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| T |
35725685 |
tgaaattactatttgcatttcttgagtctattataacttcaatttccttcaatctcccattaaacctttcaaatgctacctttatagctggattctcagc |
35725784 |
T |
|
| Q |
264 |
ccaagatggctctattttttgtccaatatactcttcatctgctgaatgctctgataatatgttcattataaccgtaaacaaggttgcttgaatttgtgat |
363 |
Q |
| |
|
||| ||||| || || |||||| | ||||||||||||| |||||| | |||||||| ||||| || | | | |||||||||||||||||||| |
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|
| T |
35725785 |
ccatgatggttcaatgagttgtcccaagtactcttcatctggtgaatgatatgataataagttcaaaatggtcatcactaaggttgcttgaatttgtgaa |
35725884 |
T |
|
| Q |
364 |
ggaaagcactccaaaagtgtttgttctggtttgttaataaatttttcccattcttccttggtagggtcttctgttggcattttgtttcttgcaattgttg |
463 |
Q |
| |
|
|| || ||||||||||||||||| || || ||||| | |||||| |||||||||||||| |||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
35725885 |
gggaaacactccaaaagtgtttgctcaggcttgttcagaaatttctcccattcttcctttgtagggtcttctgtaggcatgttgtttctagcaattgttg |
35725984 |
T |
|
| Q |
464 |
gtctattaggaaaaaagcctatataagcatattgtgtgaagttcacagctgcatgatgagcagaggctatccaagttatagtagtgatgatatcagtaag |
563 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |||| |||||| ||||| |||| ||||| |||||| |||||||| ||| | || |
|
|
| T |
35725985 |
gtctattaggaaaatagcctccataagcatattgtgcgaagtttgttgctgaatgatgtgcagatgctacccaagctatagtggtgatgatgtcaatgag |
35726084 |
T |
|
| Q |
564 |
atctttttgtgttttgagatttggccaccatggttcttcagatttgtctgcatgtcccactgttcgaatttctgtccaccatgcttggagctcttgatca |
663 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||| | || || |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
35726085 |
gtctttttgtgttttcagatttggccaccatggttcttctgatttgtcgccgtggccttttgttcgaacttctgtccaccatgcttgaagctcttgatca |
35726184 |
T |
|
| Q |
664 |
gactctacaatgctcgagcttggatagtaatgattgacataatctgtcacccattgtttgattgcatcccatattagaagaccatcattggcaaaaaggt |
763 |
Q |
| |
|
|| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
35726185 |
gattctatgatgcttggatttggatagtaatgattgacataatctgtcacccattgtttgattgcatcccatatgagaagaccatcattggcaaaagggt |
35726284 |
T |
|
| Q |
764 |
agtctt |
769 |
Q |
| |
|
|||||| |
|
|
| T |
35726285 |
agtctt |
35726290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 713 - 753
Target Start/End: Original strand, 22512568 - 22512608
Alignment:
| Q |
713 |
cccattgtttgattgcatcccatattagaagaccatcattg |
753 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
22512568 |
cccattgtttaattgcatcccatatttgaagaccatcattg |
22512608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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