View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9164J-LTR4-TNT-insertion-3 (Length: 338)
Name: F9164J-LTR4-TNT-insertion-3
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 49357176 - 49357495
Alignment:
| Q |
10 |
attttgttgattatgcatatttgctatgcaagctgagaaacctttaccttttcttactattatcactagaaatagttttaggccaaattnnnnnnnnnnn |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49357176 |
attttgttgattatgcatatttgctatgcaagctgagaaacctttaccttttcttactattatcactagaaatagttttaggccaaattaaaaaagaaaa |
49357275 |
T |
|
| Q |
110 |
nnnnnncgtttcaacctaattaatctgaggccactctaagaaaattaaaattaaccaaattgaagatatagaatttctgtgtagatctattgaggctaga |
209 |
Q |
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| T |
49357276 |
acaaaacgtttcaacctaattaatctgaggccactctaagaaaattaaaattaaccaaattgaagatatagaatttctgtgtagatctattgaggctaga |
49357375 |
T |
|
| Q |
210 |
ctcggtggatataccctcattgaatgcatcctgcatattttctatgaaagctgaaagtacaccttttatttgagaaattagtaactaaagtgatggtaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49357376 |
ctcggtggatataccctcattgaatgcatcctgcatattttctatgaaagctgaaagtacaccttttatttgagaaattagtaactaaagtgatggtaac |
49357475 |
T |
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| Q |
310 |
cggttggagcaggtcaattg |
329 |
Q |
| |
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|||||||||||||||||||| |
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| T |
49357476 |
cggttggagcaggtcaattg |
49357495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 14349600 - 14349281
Alignment:
| Q |
10 |
attttgttgattatgcatatttgctatgcaagctgagaaacctttaccttttcttactattatcactagaaatagttttaggccaaattnnnnnnnnnnn |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14349600 |
attttgttgattatgcatatttgctatgcaagctgagaaacctttaccttttcttactattatcactagaaatagttttaggccaaattaaaaaagaaaa |
14349501 |
T |
|
| Q |
110 |
nnnnnncgtttcaacctaattaatctgaggccactctaagaaaattaaaattaaccaaattgaagatatagaatttctgtgtagatctattgaggctaga |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14349500 |
acaaaacgtttcaacctaattaatctgaggccactctaagaaaattaaaattaaccaaattgaagatatagaatttctgtgtagatctattgaggcttga |
14349401 |
T |
|
| Q |
210 |
ctcggtggatataccctcattgaatgcatcctgcatattttctatgaaagctgaaagtacaccttttatttgagaaattagtaactaaagtgatggtaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14349400 |
ctcggtggatataccctcattgaatgcatcctgcatattttctatgaaagctgaaagtacaccttttatttgagaaattagtaactaaagtgatggtaac |
14349301 |
T |
|
| Q |
310 |
cggttggagcaggtcaattg |
329 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
14349300 |
cggttggagcaggtcaattg |
14349281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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