View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9164J-LTR4-TNT-insertion-9 (Length: 251)
Name: F9164J-LTR4-TNT-insertion-9
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 31948860 - 31949093
Alignment:
| Q |
8 |
gttttgtaattgattgtagacactttaaaattttatcattgcataccttgtatcggttnnnnnnnntggttttaaagcttatgtttgcgaagggaaaaac |
107 |
Q |
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| T |
31948860 |
gttttgtaattgattgtagacactttaaaattttatcattgcataccttgtatcggttaaaaaaaatggttttaaagcttatgtttgcgaagggaaaaac |
31948959 |
T |
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| Q |
108 |
agagatatagtttgtcttctaaatgctacttctaccatatattaaacaacacagaaaatatattgcaaagatttcaacaatatttcatgcatgcatcgat |
207 |
Q |
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| T |
31948960 |
agagatatagtttgtcttctaaatgctacttctaccatatattaaacaacacagaaaatatattgcaaagatttcaacaatatttcatgcatgcatcgat |
31949059 |
T |
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| Q |
208 |
cggttgctaaatttaaaatattcatcgattatta |
241 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31949060 |
cggttgctaaatttaaaatattcatcgattatta |
31949093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 74 - 241
Target Start/End: Original strand, 31947325 - 31947492
Alignment:
| Q |
74 |
tggttttaaagcttatgtttgcgaagggaaaaacagagatatagtttgtcttctaaatgctacttctaccatatattaaacaacacagaaaatatattgc |
173 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||| |
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| T |
31947325 |
tggttttaaagcttatatttgcgaagggaaaaatagagatagtatttgtcttctaaatgctagttccaccacatattaaagaacacagaaaatatattgc |
31947424 |
T |
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| Q |
174 |
aaagatttcaacaatatttcatgcatgcatcgatcggttgctaaatttaaaatattcatcgattatta |
241 |
Q |
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| T |
31947425 |
aaagatttcaacaatatttcatgcatgcatcgatccgttgctaaatttaaaatatttatcgattatta |
31947492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 31947216 - 31947273
Alignment:
| Q |
8 |
gttttgtaattgattgtagacactttaaaattttatcattgcataccttgtatcggtt |
65 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
31947216 |
gttttgtaattgattgtagacacttttaaattatatcattgcataccttgtaccggtt |
31947273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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