View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9186J-LTR4-TNT-insertion-1 (Length: 293)
Name: F9186J-LTR4-TNT-insertion-1
Description: F9186J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9186J-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 36683892 - 36683614
Alignment:
| Q |
5 |
acattttcttgcgatcatataattagtcagtagttgtgagtgtttttgaatgtactttactataatatttattcattaaactataaaaatgaatcacaat |
104 |
Q |
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| T |
36683892 |
acattttcttgcgatcatataattagtcagtagttgtgagtgtttttgaatgtactttactataatatttattcattaaactataaaaatgaatcacaat |
36683793 |
T |
|
| Q |
105 |
ttattgttaagaaaacaatttgaatcgaaaaatatgttgtttgaatatttagaaaacaatttaaactgataaagacttcatctatatgttgatttagcac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36683792 |
ttattgttaagaaaacaatttgaatcgaaaaatatgttgtttgaatatttagaaaacaatttaaactgataaagacttcatctatatgttgatttagcac |
36683693 |
T |
|
| Q |
205 |
gttgatttggccaattgcaatcaattcttttttaatataatttatttatttagaaagctaaaaaagtaaatgacaatta |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36683692 |
gttgatttggccaattgcaatcaattcttttttaatataatttatttatttagaaagctaaaaaagtaaatgacaatta |
36683614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 24200485 - 24200522
Alignment:
| Q |
232 |
ttttttaatataatttatttatttagaaagctaaaaaa |
269 |
Q |
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|||||||||| |||||||||||| |||||||||||||| |
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| T |
24200485 |
ttttttaataaaatttatttattcagaaagctaaaaaa |
24200522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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