View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9186J-LTR4-TNT-insertion-5 (Length: 269)
Name: F9186J-LTR4-TNT-insertion-5
Description: F9186J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9186J-LTR4-TNT-insertion-5 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 51779656 - 51779406
Alignment:
| Q |
9 |
caaccatcatcttatcttggttgaagaacttttatttaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaagaa |
108 |
Q |
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| T |
51779656 |
caaccatcatcttatcttggttgaagaacttttatttaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaagaa |
51779557 |
T |
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| Q |
109 |
agatataattaagttaactttttcaaaagttttaaaggatgaaataattgtgaggatgcatcaacagagctttatgagtttgcattttaactttatgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51779556 |
agatataattaagttaactttttcaaaagttttaaaggatgaaataattgtgaggatgcatcaacagagctttatgagtttgcattttaactttatgatg |
51779457 |
T |
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| Q |
209 |
ctacacttatctaaattctgttgcagtaaggtaggtatatacaagtaatta |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51779456 |
ctacacttatctaaattctgttgcagtaaggtaggtatatacaagtaatta |
51779406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 51803287 - 51803211
Alignment:
| Q |
29 |
ttgaagaacttttatttaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaa |
105 |
Q |
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| T |
51803287 |
ttgaaggacttttattgaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaa |
51803211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 51771288 - 51771207
Alignment:
| Q |
157 |
tgtgaggatgcatcaacagagctttatgagtttgcattttaactttatgatgctacacttatctaaattctgttgcagtaag |
238 |
Q |
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| T |
51771288 |
tgtgaggatgcatcagcagagctttatgagttggcatattaactttgtgatgctacacttgtctaaattctcttgcagtaag |
51771207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 51807186 - 51807107
Alignment:
| Q |
28 |
gttgaagaacttttatttaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaaga |
107 |
Q |
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||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
51807186 |
gttgaagttcttttattcaagataacattttgacatcatggactgtttggttgctttcagaaaaagatggtaaagaaaga |
51807107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 51771575 - 51771507
Alignment:
| Q |
38 |
ttttatttaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaaga |
107 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51771575 |
ttttattcaaaataat-ttttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaaga |
51771507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 6298 - 6048
Alignment:
| Q |
9 |
caaccatcatcttatcttggttgaagaacttttatttaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaagaa |
108 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6298 |
caaccatcatcttatcttggttgaaggacttttattgaagataatattttgacatcatggattgtttggttgcttttagaaaaagatggtaaagaaagaa |
6199 |
T |
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| Q |
109 |
agatataattaagttaactttttcaaaagttttaaaggatgaaataattgtgaggatgcatcaacagagctttatgagtttgcattttaactttatgatg |
208 |
Q |
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| T |
6198 |
agatataattaagttaactttttcaaaagttttaaaggatgaaataattgtgaggatgcatcaacagagctttatgagtttgcattttaactttatgatg |
6099 |
T |
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| Q |
209 |
ctacacttatctaaattctgttgcagtaaggtaggtatatacaagtaatta |
259 |
Q |
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| T |
6098 |
ctacacttatctaaattctgttgcagtaaggtaggtatatacaagtaatta |
6048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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