View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9186J-LTR4-TNT-insertion-6 (Length: 658)
Name: F9186J-LTR4-TNT-insertion-6
Description: F9186J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9186J-LTR4-TNT-insertion-6 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 635; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 7 - 649
Target Start/End: Original strand, 22841669 - 22842311
Alignment:
| Q |
7 |
atgaggaatatcaaggagcggcttctcaggttttacttatggatccaatgccaccaatcaatagggttttttcaatggttatgcaacaggaaaggaaaat |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22841669 |
atgaggaatatcaaggagtggcttctcaggttttacttatggatccaatgccaccaatcaatagggttttttcaatggttatgcaacaggaaaggaaaat |
22841768 |
T |
|
| Q |
107 |
gcaatatggtgttatcaatgttcagaatacaccattagaggatactacaagtattgtaaatgcagtgaatggtcaaaaacagtttggcagaggtagagga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22841769 |
gcaatatggtgttatcaatgttcagaatacaccattagaggatactacaagtattgtaaatgcagtgaatggtcaaaaacagtttggcagaggtagagga |
22841868 |
T |
|
| Q |
207 |
aatgggtcttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaacttgttacaagaagcatggat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22841869 |
aatgggtcttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaagaactaatcacacagtggaaacttgttacaagaagcatggat |
22841968 |
T |
|
| Q |
307 |
accctccaaactggggaagaggtggaggaaattcctatgctaatatgattgatggagatgatgtagagagtaaaatgcagactgcatcaactagcaggaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22841969 |
accctccaaactggggaagaggtggaggaaattcctatgctaatatgattgatggagatgatgtagagagtaaaatgcagactgcatcaactagcaggaa |
22842068 |
T |
|
| Q |
407 |
tgaagaaagtgcaggggtcactcttactaaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgagacaaagtgttcagcaaatgtt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22842069 |
tgaagaaagtgcaggggtcactcttactaaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgagacaaagtgttcagcaaatgtt |
22842168 |
T |
|
| Q |
507 |
gtgaaaggtatcaattactcttcatttattggaggtaattcatgttttgctaattttgatgataagcatgctgatactggatggattatagatacaggag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22842169 |
gtgaaaggtatcaattactcttcatttattggaggtaattcatgttttgctaattttgatgataagcatgctgatactggatggattatagatacaggag |
22842268 |
T |
|
| Q |
607 |
ctacacatcatacatgttttgatttgaaatggttcagtaattg |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22842269 |
ctacacatcatacatgttttgatttgaaatggttcagtaattg |
22842311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 15525705 - 15525594
Alignment:
| Q |
29 |
ttctcaggttttacttatggatccaatgccaccaatcaatagggttttttcaatggttatgcaacaggaaaggaaaatgcaatatggtgttatcaatgtt |
128 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
15525705 |
ttctcaggttttgctgatggatccaatgccaccaataaatagggtattttctatggttatccaacaagaaaggaaactgcaatatggtgtgatcaatgtt |
15525606 |
T |
|
| Q |
129 |
cagaatacacca |
140 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15525605 |
cagaatacacca |
15525594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 554 - 649
Target Start/End: Complemental strand, 15525580 - 15525485
Alignment:
| Q |
554 |
tgctaattttgatgataagcatgctgatactggatggattatagatacaggagctacacatcatacatgttttgatttgaaatggttcagtaattg |
649 |
Q |
| |
|
||||||||||||| | || |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
15525580 |
tgctaattttgataacaatcatgctgatactagatgtattatagatacaggagctacacatcatacttgttttgatttgaaatgttttagtaattg |
15525485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 7 - 649
Target Start/End: Original strand, 14233175 - 14233817
Alignment:
| Q |
7 |
atgaggaatatcaaggagcggcttctcaggttttacttatggatccaatgccaccaatcaatagggttttttcaatggttatgcaacaggaaaggaaaat |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
|
|
| T |
14233175 |
atgaggaatatcaaggagtggcttctcaggttttacttatggatccaatgccaccaatcaatagggtattttctatggttatgcaacaggaaaggaaact |
14233274 |
T |
|
| Q |
107 |
gcaatatggtgttatcaatgttcagaatacaccattagaggatactacaagtattgtaaatgcagtgaatggtcaaaaacagtttggcagaggtagagga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233275 |
gcaatatggtgttatcaatgttcagaatacaccattagaggatactgcaagtattgtaaatgcagtgaatggtcaaaaacagtttggcagaggtagagga |
14233374 |
T |
|
| Q |
207 |
aatgggtcttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaacttgttacaagaagcatggat |
306 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14233375 |
aatgggttttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaagaactaatcacacagtggatacttgttacaagaagcatggat |
14233474 |
T |
|
| Q |
307 |
accctccaaactggggaagaggtggaggaaattcctatgctaatatgattgatggagatgatgtagagagtaaaatgcagactgcatcaactagcaggaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233475 |
accctccaaactggggaagaggtggaggaaattcctatgctaatatgattgatggagatgatgtagagagtaaaatgcagactgcatcaactagcaggaa |
14233574 |
T |
|
| Q |
407 |
tgaagaaagtgcaggggtcactcttactaaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgagacaaagtgttcagcaaatgtt |
506 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233575 |
tgaagaaagtgcaggggtcactctcactaaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgagacaaagtgttcagcaaatgtt |
14233674 |
T |
|
| Q |
507 |
gtgaaaggtatcaattactcttcatttattggaggtaattcatgttttgctaattttgatgataagcatgctgatactggatggattatagatacaggag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233675 |
gtgaaaggtatcaattactcttcatttattggaggtaattcatgtttttctaattttgatgataagcatgctgatactggatggattatagatacaggag |
14233774 |
T |
|
| Q |
607 |
ctacacatcatacatgttttgatttgaaatggttcagtaattg |
649 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14233775 |
ctacacatcatacctgttttgatttgaaatggttcagtaattg |
14233817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 15852165 - 15852537
Alignment:
| Q |
7 |
atgaggaatatcaaggagcggcttctcaggttttacttatggatccaatgccaccaatcaatagggttttttcaatggttatgcaacaggaaaggaaaat |
106 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||| | |||||||||||||||||||| ||||| || ||| || | ||||||||||| |||| || | |
|
|
| T |
15852165 |
atgaagaatgtcaaggagtggcttctcaggttttattgatggatccaatgccaccaattaatagagtatttccattagttatgcaacaagaaacgatgtt |
15852264 |
T |
|
| Q |
107 |
gcaatatggtgttatcaatgttcagaatacaccattagaggatactacaagtattgtaaatgcagtgaatggtcaaaaacagtttggcagaggtagagga |
206 |
Q |
| |
|
||| |||||||| | ||||| || |||||||| || || || ||| || || | ||||||| |||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
15852265 |
gcagtatggtgtagttaatgtccaaaatacacctttggaagaaactgcatgtctggtaaatgttgtgaatggacaaaagcagtttggaagaggtagaggt |
15852364 |
T |
|
| Q |
207 |
aatgggtcttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaacttgttacaagaagcatggat |
306 |
Q |
| |
|
| |||| |||||||||||||||||| ||||| ||| ||||||| |||| ||||| | | || | ||||| | |||||||||||||||||||| |
|
|
| T |
15852365 |
ggtaattcttatcaaggaagaggaagaggaaatggtagagtttgtactttttttgaaagatcgggacatattgtggacagttgttacaagaagcatggat |
15852464 |
T |
|
| Q |
307 |
accctccaaactggggaagaggtggaggaaattcctatgctaatatgattgatggagatgatgtagagagtaa |
379 |
Q |
| |
|
| || ||||||| ||| ||||| || ||||||| |||||||||||| | |||| ||||||| ||||||||| |
|
|
| T |
15852465 |
atccaccaaactagggtagaggaggtggaaattattatgctaatatggtagatgcagatgatacagagagtaa |
15852537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 175 - 350
Target Start/End: Original strand, 20599648 - 20599820
Alignment:
| Q |
175 |
atggtcaaaaacagtttggcagaggtagaggaaatgggtcttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatca |
274 |
Q |
| |
|
||||||| | ||| ||||| | ||||||||||||||| || |||||||||||||||||| ||| ||| | |||| || ||| | | ||||||||| |
|
|
| T |
20599648 |
atggtcagagacaatttggtataggtagaggaaatgg---ttttcaaggaagaggaagagggaatctcagagtgtgtagtttctgtaatagaactaatca |
20599744 |
T |
|
| Q |
275 |
cacagtggaaacttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattcctatgctaat |
350 |
Q |
| |
|
||| ||| |||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| | ||||||| |
|
|
| T |
20599745 |
cactgtgaaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaat |
20599820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 640
Target Start/End: Original strand, 15852667 - 15852815
Alignment:
| Q |
492 |
tgttcagcaaatgttgtgaaaggtatcaattactcttcatttattggaggtaattcatgttttgctaattttgatgataagcatgctgatactggatgga |
591 |
Q |
| |
|
|||||||||||||| |||||||||| |||| || |||| ||| |||||||||||| | | |||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
15852667 |
tgttcagcaaatgtggtgaaaggtagaaattccttttcacacattagaggtaattcatatctggctagttttgatagtaagcataatgatactggatgga |
15852766 |
T |
|
| Q |
592 |
ttatagatacaggagctacacatcatacatgttttgatttgaaatggtt |
640 |
Q |
| |
|
|| |||| ||| || || |||||||| |||| ||||||||| ||||| |
|
|
| T |
15852767 |
ttgtagacacaaaagaaactcatcatacttgttatgatttgaattggtt |
15852815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 4695728 - 4695602
Alignment:
| Q |
219 |
caaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaacttgttacaagaagcatggataccctccaaact |
318 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| || |||| || | |||||||| |||| |||||||| ||||||||||| | ||||| || | |
|
|
| T |
4695728 |
caaggaagaggaagaggcaatggaagagtttgtaatttctgtggaaggtcaaatcacaccatggagacttgttataagaagcatggctttcctcctaatt |
4695629 |
T |
|
| Q |
319 |
ggggaagaggtggaggaaattcctatg |
345 |
Q |
| |
|
|||| ||||| ||||||||||| |||| |
|
|
| T |
4695628 |
ggggtagaggaggaggaaattcttatg |
4695602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 7 - 642
Target Start/End: Original strand, 37175060 - 37175716
Alignment:
| Q |
7 |
atgaggaatatcaaggagcggcttctcaggttttacttatggatccaatgccaccaatcaatagggttttttcaatggttatgcaacaggaaaggaaaat |
106 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| | |||||||||||||||||||| ||||| || ||||| | ||||||||||| || ||||| | |
|
|
| T |
37175060 |
atgaagaatatcaaggagtagcctctcaggttttattgatggatccaatgccaccaattaatagagtattttctctagttatgcaacaagagaggaagtt |
37175159 |
T |
|
| Q |
107 |
gcaatatggtgt--tatca-atgttcagaatacaccattagaggatactacaagtattgtaaatgcagtgaatggtcaaaaacagtttggcagaggtaga |
203 |
Q |
| |
|
||| |||| ||| | || ||||||| |||||| | ||||| || | |||| || | || ||||| |||||||| || ||||| ||||| ||||||||| |
|
|
| T |
37175160 |
gcagtatgctgtagtttctcatgttcaaaatacatctttagaagacaatacaggtctggtgaatgctgtgaatggccagaaacaatttggaagaggtaga |
37175259 |
T |
|
| Q |
204 |
ggaaatgggtcttctcaaggaagaggaagagg------------------taatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaa |
285 |
Q |
| |
|
||| | |||| |||||||||||||||||| |||||| ||||| || || || ||||||| ||| ||||| || || |||| |
|
|
| T |
37175260 |
ggaggtacttcttatcaaggaagaggaagaggaaatggtagaggaaatggtaatggtagattctgcactttctgtgaaagaacaaatcatactgttgaaa |
37175359 |
T |
|
| Q |
286 |
cttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattcctatgctaatatgattgatggagatgatgtagagagtaaaatgca |
385 |
Q |
| |
|
||||||| || |||||||| || || ||||| ||||||||||| || |||||||| ||| | |||||| | |||| ||| ||| || ||||| || | |
|
|
| T |
37175360 |
cttgttataaaaagcatggttatccaccaaattggggaagaggaggtggaaattcttatacaaatatggtagatgcagaagatactgaaagtaagatcaa |
37175459 |
T |
|
| Q |
386 |
gactgcatcaactagcaggaatgaagaaagtgcaggggtcactcttactaaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgag |
485 |
Q |
| |
|
| | ||| || ||||| ||||| |||| |||||| | |||||||| ||||| || ||||||||||| ||||| ||||||||||||| ||| ||||| |
|
|
| T |
37175460 |
tatgggatctacaagcagaaatgatgaaaatgcaggcattactcttacaaaggaccagtatcagaatcttatgtcactattggaaaagaataatcttgaa |
37175559 |
T |
|
| Q |
486 |
acaaagtgttcagcaaatgttgtgaaaggtatcaattactcttcatttattggaggtaattcatgttttgctaattttgatgataagcatgctgatactg |
585 |
Q |
| |
|
|| ||||| ||||| ||||| |||||||||| ||| | |||| | ||| | |||| ||| | |||||| ||||||| |||||| |||| ||| |
|
|
| T |
37175560 |
actaagtgctcagctaatgtggtgaaaggtagcaactctatttcactctttgaaagtaaatcacttcttgctagttttgatagtaagcaaaatgatcctg |
37175659 |
T |
|
| Q |
586 |
gatggattatagatacaggagctacacatcatacatgttttgatttgaaatggttca |
642 |
Q |
| |
|
||||||| ||||||||||||| || ||||| || |||| ||||||||| ||||||| |
|
|
| T |
37175660 |
gatggatagtagatacaggagcaactcatcacacttgttatgatttgaactggttca |
37175716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 3175 - 3296
Alignment:
| Q |
219 |
caaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaacttgttacaagaagcatggataccctccaaact |
318 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| || |||| || | |||||||| |||| |||||||| ||||||||||| | ||||| || | |
|
|
| T |
3175 |
caaggaagaggaagaggcaatggaagagtttgtaatttctgtggaaggtcaaatcacaccatggagacttgttataagaagcatggctttcctcctaatt |
3274 |
T |
|
| Q |
319 |
ggggaagaggtggaggaaattc |
340 |
Q |
| |
|
|||| ||||| ||||| ||||| |
|
|
| T |
3275 |
ggggtagaggaggaggtaattc |
3296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 31233627 - 31233553
Alignment:
| Q |
266 |
aactaatcacacagtggaaacttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattc |
340 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||| || | ||| || ||||| ||||| || |||||||| |
|
|
| T |
31233627 |
aactaatcacacagttgaaacatgttacaagaaacatggttagcttcctaattggggcagaggaggtggaaattc |
31233553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 23418852 - 23418726
Alignment:
| Q |
219 |
caaggaagaggaagaggtaatggaagattttgtaccttttgtgaaaaaactaatcacacagtggaaacttgttacaagaagcatggataccctccaaact |
318 |
Q |
| |
|
||||||||||||||||| || |||||| |||||| || |||| || | |||||||| |||| |||||||| ||||||||||| | ||||| || | |
|
|
| T |
23418852 |
caaggaagaggaagaggcaacggaagagtttgtaatttctgtggaaggtcaaatcacaccatggagacttgttataagaagcatggctttcctcctaatt |
23418753 |
T |
|
| Q |
319 |
ggggaagaggtggaggaaattcctatg |
345 |
Q |
| |
|
|||| ||||| ||||| ||||| |||| |
|
|
| T |
23418752 |
ggggtagaggaggaggtaattcttatg |
23418726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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