View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9262-LTR4-TNT-insertion-1 (Length: 309)
Name: F9262-LTR4-TNT-insertion-1
Description: F9262-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9262-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 30058685 - 30058962
Alignment:
| Q |
11 |
tgtcggcttagccattggtttgggtcacgggctttcttgtgtatttcttccttttaaaatgagatttctgctcttttccctacacttttcgttcgcgctt |
110 |
Q |
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| T |
30058685 |
tgtcggcttagccattggtttgggtcacgggctttcttgtgtatttcttccttttaaaatgagatttctgctcttttccctacacttttcgttcgcgctt |
30058784 |
T |
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| Q |
111 |
tgtagccataacgaaaatatccctactgcattagttaactaatgcaagtgtnnnnnnntgtgacttaaattacgcatttgtaaaaactaaatcacannnn |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30058785 |
tgtagccataacgaaaatatccctactgcattagttaactaatgcaagtgtaaaaaaatgtgacttaaattacgcatttgtaaaaactaaatcacatttt |
30058884 |
T |
|
| Q |
211 |
nnnnnacacttttcgtagtgcaaacaacccaaaagatccggtcgagctcaaatccatattaaaaaccaaatgttatta |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30058885 |
tttttacacttttcgtagtgcaaacaacccaaaagatccggtcgagctcaaatccatattaaaaaccaaatgttatta |
30058962 |
T |
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