View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9262-LTR4-TNT-insertion-3 (Length: 708)

Name: F9262-LTR4-TNT-insertion-3
Description: F9262-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9262-LTR4-TNT-insertion-3
F9262-LTR4-TNT-insertion-3
[»] chr6 (30 HSPs)
chr6 (8-449)||(24715607-24716048)
chr6 (510-696)||(24716109-24716295)
chr6 (8-330)||(26975077-26975396)
chr6 (8-330)||(26635715-26636034)
chr6 (8-330)||(26741681-26742000)
chr6 (8-304)||(25071684-25071977)
chr6 (19-330)||(26959202-26959510)
chr6 (19-285)||(27665005-27665268)
chr6 (8-330)||(26848685-26849004)
chr6 (8-330)||(26949686-26950005)
chr6 (68-304)||(27214499-27214738)
chr6 (68-304)||(27234490-27234729)
chr6 (510-594)||(26975475-26975559)
chr6 (510-598)||(25074394-25074482)
chr6 (516-594)||(26950273-26950351)
chr6 (510-594)||(26636170-26636254)
chr6 (510-594)||(26742136-26742220)
chr6 (151-287)||(26811674-26811810)
chr6 (510-594)||(26959650-26959734)
chr6 (510-594)||(31288829-31288913)
chr6 (39-94)||(26617375-26617427)
chr6 (194-287)||(26617830-26617923)
chr6 (39-94)||(26723303-26723355)
chr6 (194-287)||(26723758-26723851)
chr6 (68-179)||(26341925-26342039)
chr6 (68-113)||(2184370-2184415)
chr6 (68-121)||(26656071-26656124)
chr6 (68-121)||(26762042-26762095)
chr6 (70-123)||(28227034-28227087)
chr6 (8-60)||(26811534-26811586)
[»] chr2 (2 HSPs)
chr2 (10-337)||(17993520-17993844)
chr2 (510-594)||(17992789-17992873)
[»] scaffold0038 (1 HSPs)
scaffold0038 (70-123)||(27532-27585)
[»] chr1 (1 HSPs)
chr1 (196-257)||(28127582-28127643)


Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 24715607 - 24716048
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24715607 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 24715706  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24715707 catcatccattgcttcaataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 24715806  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24715807 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 24715906  T
Q  308 accaccatgtcaagcttgggtactcatcttccccccaccgcccaaccatcacacacacatgtgttaaagagaaaagatatatgttttctattttatattc 407  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24715907 gccaccatgtcaagcttgggtactcatcttccccccaccgcccaaccatcacacacacatgtgttaaagagaaaagatatatgttttctattttatattc 24716006  T
Q  408 atattaaaaatattaggtcattgtatggtgaaacaaattgca 449  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24716007 atattaaaaatattaggtcattgtatggtgaaacaaattgca 24716048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 510 - 696
Target Start/End: Original strand, 24716109 - 24716295
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagttagagagtatgcgaaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24716109 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagttagagagtatgcgaaca 24716208  T
Q  610 gtgttgttgcaaaatctcatgacaccagaatataaaaatctgcaacgaaaatgaaatcatgatgggatgacgatgtttcgattaaat 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24716209 gtgttgttgcaaaatctcatgacaccagaatataaaaatctgcaacgaaaatgaaatcatgatgggatgacgatgtttcgattaaat 24716295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 26975077 - 26975396
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    ||||||||||||||||||| ||||||||||  ||| ||||||| ||||||||||||   |||||||||||||||||||||||||| | |||||||  |||    
T  26975077 cttcgctcctcaagagcattgaagactcgaggattaccattatcgtcttctctaaa---gactatgcttcttcttcattttgtttggacgaacttgtcca 26975173  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
    |||||| ||||| | | || | |||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  26975174 catcattcattgttccaatgaaaagggtagcatagttattcctgttttctatggcacagaaccttctcatgtgcgtaaactgaatgacagttatggtgaa 26975273  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 307  Q
    |  ||||||||||||||||| |||||||||||||| || ||| || |||| |||||||| |||| ||||| |||||||||  |||| ||| |||||| ||    
T  26975274 gtacttgctaagcatgaagaggggtttcaaaataaaaatgaaaacttggagcggttgcttaaatggaagaaagctcttaaccaagctgctaacttatctg 26975373  T
Q  308 accaccatgtcaagcttgggtac 330  Q
     ||||||| |||| |||||||||    
T  26975374 gccaccatttcaatcttgggtac 26975396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 26635715 - 26636034
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    ||||||||||||||||||| ||||| ||||  ||||||||||| || ||||||||    || |||||||||||||  |||||||| |  ||||||  |||    
T  26635715 cttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaag---gaatatgcttcttctttgttttgtttggatgaacttgtcca 26635811  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
    |||||| ||||||| | || | |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26635812 catcattcattgctccaatgaaaagggtagcaaggttattcctgttttctatggcaccgaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 26635911  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 307  Q
    || |||||||||||||||||   ||||||||||| ||||||| |||||||  |||||||||||| ||||| |||||||||  |||| ||| |||||| ||    
T  26635912 gcgcttgctaagcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctg 26636011  T
Q  308 accaccatgtcaagcttgggtac 330  Q
     ||||||| |||| |||||||||    
T  26636012 gccaccatttcaatcttgggtac 26636034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 26741681 - 26742000
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    ||||||||||||||||||| ||||| ||||  ||||||||||| || ||||||||    || |||||||||||||  |||||||| |  ||||||  |||    
T  26741681 cttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaag---gaatatgcttcttctttgttttgtttggatgaacttgtcca 26741777  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
    |||||| ||||||| | || | |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26741778 catcattcattgctccaatgaaaagggtagcaaggttattcctgttttctatggcaccgaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 26741877  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 307  Q
    || |||||||||||||||||   ||||||||||| ||||||| |||||||  |||||||||||| ||||| |||||||||  |||| ||| |||||| ||    
T  26741878 gcgcttgctaagcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctg 26741977  T
Q  308 accaccatgtcaagcttgggtac 330  Q
     ||||||| |||| |||||||||    
T  26741978 gccaccatttcaatcttgggtac 26742000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 25071684 - 25071977
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    ||||||||| ||||||||| ||||| |||| |||||||||||| ||||||||||||   |||||||||||||||||||||||||||| |||||||  |||    
T  25071684 cttcgctccgcaagagcattgaagattcgagaattgccattatcgtcttctctaaa---gactatgcttcttcttcattttgtttagacgaacttgtcca 25071780  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
    |||||| || | |||| |  | ||| || || | ||| | ||  ||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||    
T  25071781 catcattcactacttcaaggaaaagagtcgccttgttctaccaattttctatggcaccgaaccttcgcaggtgcgaaaactgaatgacagttatggtgaa 25071880  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttat 304  Q
     |  |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||  |||| ||| ||||||    
T  25071881 tcatttgctaagcatgaagaggggtttcaaaataacaaggaacacatggagcggttgctgacatggaagaaagctcttaacgaagctgctaacttat 25071977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 26959202 - 26959510
Alignment:
Q  19 aagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttcccacatcatccatt 118  Q
    |||||||| ||||||||||  ||||||||||| || ||||||||    || |||||||||||||| |||| ||| |  ||||||  ||||||||| ||||    
T  26959202 aagagcattgaagactcgaggattgccattatcgttttctctaag---gaatatgcttcttcttcgttttatttggatgaacttgtccacatcattcatt 26959298  T
Q  119 gcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaagctcttgctaa 218  Q
     || | || | || ||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  26959299 tctccaatgaaaaaggtagcacgattattcctgttttctatggcacagaaccttctcatgtgcgaaaactaaatggcagttatggtgaagcgcttgctaa 26959398  T
Q  219 gcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtgaccaccatgtc 318  Q
    |||||||||   ||||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||  |||| ||| |||||| || ||||||| ||    
T  26959399 gcatgaagagcagtttcaaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttc 26959498  T
Q  319 aagcttgggtac 330  Q
    || |||||||||    
T  26959499 aatcttgggtac 26959510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 27665268 - 27665005
Alignment:
Q  19 aagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttcccacatcatccatt 118  Q
    |||||||| ||||| ||||  |||||||||||| | ||||||||     |||||||| ||||||||||||||||||  ||||||  ||||||||| ||||    
T  27665268 aagagcattgaagaatcgaggattgccattattatattctctaaga---actatgctacttcttcattttgtttagatgaacttgtccacatcattcatt 27665172  T
Q  119 gcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaagctcttgctaa 218  Q
    |||||    | |||| |  || |||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||||||||||| ||||||||    
T  27665171 gcttcagagaaaaggttaccaaggttattcctgttttctatggcaccgaaccttctcatgtgcgaaaactggaagacagttatggtgaagcacttgctaa 27665072  T
Q  219 gcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctctt 285  Q
    ||||||||  | |||||||||| ||| |||| ||||||| ||||||||||||| ||||  |||||||    
T  27665071 gcatgaagtggagtttcaaaatgacatggaaaacatggagcggttgctgaaatggaaggaagctctt 27665005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 26848685 - 26849004
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    ||||||||||||||| ||| ||||||||||  ||| ||||| |||| |||||| |     |||||||  ||||||| |||||||| | |||||||  |||    
T  26848685 cttcgctcctcaagaacattgaagactcgaggatttccattcttgtattctctgaga---actatgccacttcttcgttttgtttggacgaacttgtcca 26848781  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
    |||||| ||||||| | |  | |||||| |||||||||||||||||||||||||||  |||||||||||||||||| | |  |||   ||||||||||||    
T  26848782 catcattcattgctccaaggaaaagggtagcatggttattcctgttttctatggcatagaaccttctcatgtgcgacatcagaatagtagttatggtgaa 26848881  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 307  Q
    || ||||||||||||||||| | |||||||||||||||||||  |||||| || ||||  |||| ||||| |||||||||  | || ||| |||||| ||    
T  26848882 gcacttgctaagcatgaagaggtgtttcaaaataacaaggaaagcatggagcgtttgcgtaaatggaagaaagctcttaaccatgctgctaacttatctg 26848981  T
Q  308 accaccatgtcaagcttgggtac 330  Q
     ||||||| ||||  ||||||||    
T  26848982 gccaccatttcaattttgggtac 26849004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 26949686 - 26950005
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttccca 107  Q
    |||| ||||||||||| || ||||| |||| |||||||||||| ||||| |||||    || ||||||||||||||||||||||||| |||||||  |||    
T  26949686 cttcactcctcaagagaattgaagaatcgagaattgccattatcgtcttttctaag---gaatatgcttcttcttcattttgtttagacgaacttgtcca 26949782  T
Q  108 catcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaa 207  Q
     ||||| || | |||| |  | || ||| || | ||| | || ||||||||||     ||||||||||| |||||| | |  ||| | ||||||||||||    
T  26949783 tatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttctatgatgtagaaccttctcacgtgcgacatcagaattatagttatggtgaa 26949882  T
Q  208 gctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtg 307  Q
    || |||||||||||||||||  |||| ||||| | |||  || ||||||| ||||||||||||| ||||| |||||| || ||||  |||||||||| ||    
T  26949883 gcacttgctaagcatgaagagaggttccaaaagagcaaaaaaaacatggagcggttgctgaaatggaagatagctctgaacaaagttgctgacttatctg 26949982  T
Q  308 accaccatgtcaagcttgggtac 330  Q
     | ||||| |||| |||||||||    
T  26949983 gctaccatttcaatcttgggtac 26950005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 68 - 304
Target Start/End: Original strand, 27214499 - 27214738
Alignment:
Q  68 actatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacgga 167  Q
    |||||||| |||||||||||||||| | |||||||  ||||||||  ||||||| | |  | || ||| || | ||| | |||||||||||||||   ||    
T  27214499 actatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttctatggcgttga 27214598  T
Q  168 accttctcatgtgcgaaaactaaatgaca---gttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttg 264  Q
    |||||||||  ||||| | || ||  |||   ||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  27214599 accttctcacttgcgacatctgaacaacaacagttatggtgaagcgcttgctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttg 27214698  T
Q  265 ctgaaatagaagacagctcttaaaaaagccgctgacttat 304  Q
    | ||||| ||||| |||||||||  |||| ||| ||||||    
T  27214699 cagaaatggaagatagctcttaaccaagctgctaacttat 27214738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 68 - 304
Target Start/End: Complemental strand, 27234729 - 27234490
Alignment:
Q  68 actatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacgga 167  Q
    |||||||| |||||||||||||||| | |||||||  ||||||||  ||||||| | |  | || ||| || | ||| | |||||||||||||||   ||    
T  27234729 actatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttctatggcgttga 27234630  T
Q  168 accttctcatgtgcgaaaactaaatgaca---gttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttg 264  Q
    |||||||||  ||||| | || ||  |||   ||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  27234629 accttctcacttgcgacatctgaacaacaacagttatggtgaagcgcttgctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttg 27234530  T
Q  265 ctgaaatagaagacagctcttaaaaaagccgctgacttat 304  Q
    | ||||| ||||| |||||||||  |||| ||| ||||||    
T  27234529 cagaaatggaagatagctcttaaccaagctgctaacttat 27234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 26975475 - 26975559
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    |||||||||||||||||||| |||||  || ||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||    
T  26975475 gtgattgttattctgatgcatgtatttaaatatttatgattggacagaaatgaatatgaacgtgattttattgaaaaaatagtta 26975559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 598
Target Start/End: Original strand, 25074394 - 25074482
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagttagaga 598  Q
    |||||| ||||||| ||||| |||||  || ||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||    
T  25074394 gtgattattattctaatgcatgtatttaaatatttatgattggacagaaatgaatatgaacgtgattttattgaaaaaatagttagaga 25074482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 594
Target Start/End: Original strand, 26950273 - 26950351
Alignment:
Q  516 gttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    ||||||||||||||  ||||  || ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  26950273 gttattctgatgcatttatttaaatatttatgattggacagaaatgaatatgaacgcgattttattgaaaaaatagtta 26950351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 26636170 - 26636254
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    ||||||||||||||||| || |||||  || ||| ||||||||||||||||||| ||||| | ||| ||||||||||||||||||    
T  26636170 gtgattgttattctgatacatgtatttaaatattcatgattggacagaaatgaatatgaacgtgattttattgaaaaaatagtta 26636254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 26742136 - 26742220
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    ||||||||||||||||| || |||||  || ||| ||||||||||||||||||| ||||| | ||| ||||||||||||||||||    
T  26742136 gtgattgttattctgatacatgtatttaaatattcatgattggacagaaatgaatatgaacgtgattttattgaaaaaatagtta 26742220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 26811674 - 26811810
Alignment:
Q  151 gttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaac 250  Q
    |||||||||||   |||||||||||| |||||| | | |||| |||  ||||||||||| ||| || ||  ||||||   ||| |||||||||||||||     
T  26811674 gttttctatggtgtggaaccttctcacgtgcgacatcaaaataacaagtatggtgaagcacttactgagtttgaagaaatgttccaaaataacaaggaaa 26811773  T
Q  251 acatggaccggttgctgaaatagaagacagctcttaa 287  Q
    ||||||| ||||||| ||||| ||||| |||||||||    
T  26811774 acatggatcggttgcagaaatggaagatagctcttaa 26811810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 26959650 - 26959734
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    |||||||||||||| || || |||||  || ||||||||||||||||||||||  ||||| | ||| ||||||||||||||||||    
T  26959650 gtgattgttattctaatacatgtatttaaatatttatgattggacagaaatgagtatgaacgtgattttattgaaaaaatagtta 26959734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 31288829 - 31288913
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    ||||| ||||||||||||||  ||||  || ||||||||||||||| ||||||| ||||| | ||| ||||||||||||||||||    
T  31288829 gtgatagttattctgatgcatttatttaaatatttatgattggacataaatgaatatgaacgagattttattgaaaaaatagtta 31288913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 26617375 - 26617427
Alignment:
Q  39 aattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttag 94  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  26617375 aattgccattgttgtcttctctaaa---gactatgcttcttcttcattttgtttag 26617427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 26617830 - 26617923
Alignment:
Q  194 acagttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaa 287  Q
    |||| ||||||||||| ||| || ||  ||||||  |||| ||||||||||||||| ||||||| ||||||| ||||| ||||| |||||||||    
T  26617830 acaggtatggtgaagcacttactgagtttgaagaaaggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaa 26617923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 26723303 - 26723355
Alignment:
Q  39 aattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttag 94  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  26723303 aattgccattgttgtcttctctaaa---gactatgcttcttcttcattttgtttag 26723355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 26723758 - 26723851
Alignment:
Q  194 acagttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaa 287  Q
    |||| ||||||||||| ||| || ||  ||||||  |||| ||||||||||||||| ||||||| ||||||| ||||| ||||| |||||||||    
T  26723758 acaggtatggtgaagcacttactgagtttgaagaaaggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaa 26723851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 26342039 - 26341925
Alignment:
Q  68 actatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgcttcta---taacaagggtggcatggttattcctgttttctatggcac 164  Q
    |||||||||||||||| |||||||| | |||||||  ||||||||| ||||||||| |    || |||||| |||   || | ||||||||||||| ||     
T  26342039 actatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaagaagggtcgcaaaattttgcctgttttctatgacat 26341940  T
Q  165 ggaaccttctcatgt 179  Q
    |||||||||||||||    
T  26341939 ggaaccttctcatgt 26341925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 2184370 - 2184415
Alignment:
Q  68 actatgcttcttcttcattttgtttaggcgaactttcccacatcat 113  Q
    ||||||||||||||||||||||||| | |||||||  |||||||||    
T  2184370 actatgcttcttcttcattttgtttggacgaacttgtccacatcat 2184415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 26656071 - 26656124
Alignment:
Q  68 actatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgct 121  Q
    ||||||| ||||||||||||||||| | |||||||  ||||||||| |||||||    
T  26656071 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgct 26656124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 26762042 - 26762095
Alignment:
Q  68 actatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgct 121  Q
    ||||||| ||||||||||||||||| | |||||||  ||||||||| |||||||    
T  26762042 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgct 26762095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 28227034 - 28227087
Alignment:
Q  70 tatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgcttc 123  Q
    |||||||||||||||||||| || | |||||||  ||||||||| |||||||||    
T  28227034 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttc 28227087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26811534 - 26811586
Alignment:
Q  8 cttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctct 60  Q
    ||||||||||||||||||| ||| |||| |  |||||||||||||| ||||||    
T  26811534 cttcgctcctcaagagcattgaacactctaggattgccattattgtattctct 26811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 17993844 - 17993520
Alignment:
Q  10 tcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgtttaggcgaactttcccaca 109  Q
    ||||||||||||||||| |||||||| | |||||| ||||| |||||||| ||    |||||||||||||||||||||||||||| |||||||  |||||    
T  17993844 tcgctcctcaagagcattgaagactcaagaattgcgattatcgtcttctcaaag---gactatgcttcttcttcattttgtttagacgaacttgtccaca 17993748  T
Q  110 tcatccattgcttctataacaagggtggcatggttattcctgttttctatggcacggaaccttctcatgtgcgaaaactaaatgacagttatggtgaagc 209  Q
    |||| || |||| | || | ||||||   | ||| |||||||||||||||||||| ||||||||||| |||||| | |  ||||| ||||||||||||||    
T  17993747 tcattcaatgctccaatgaaaagggtacgacggtaattcctgttttctatggcacagaaccttctcaggtgcgacatcagaatgatagttatggtgaagc 17993648  T
Q  210 tcttgctaagcatgaagacgggtttcaaaataacaaggaacacatggaccggttgctgaaatagaagacagctcttaaaaaagccgctgacttatgtgac 309  Q
     ||||||||||||||||| || |||||||||| ||||||| ||||||| |||||| |||||| ||||| |||||||||  |||| ||| |||||| || |    
T  17993647 acttgctaagcatgaagagggttttcaaaatagcaaggaaaacatggagcggttgttgaaatggaagaaagctcttaaccaagctgctaacttatctggc 17993548  T
Q  310 caccatgtcaagcttgggtactcatctt 337  Q
    |||||| |||| |  |||||||||||||    
T  17993547 caccatttcaatcaagggtactcatctt 17993520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 594
Target Start/End: Complemental strand, 17992873 - 17992789
Alignment:
Q  510 gtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta 594  Q
    |||||| ||||||||||||| |||||  || |||| |||||||||||||||||| ||||| | ||| ||||||||||||||||||    
T  17992873 gtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagtta 17992789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 27532 - 27585
Alignment:
Q  70 tatgcttcttcttcattttgtttaggcgaactttcccacatcatccattgcttc 123  Q
    |||||||||||||||||||| || | |||||||  ||||||||| |||||||||    
T  27532 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttc 27585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 28127643 - 28127582
Alignment:
Q  196 agttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatgga 257  Q
    |||||||||||||  ||||||||||||| |||  |||| |||||||||||| || |||||||    
T  28127643 agttatggtgaagagcttgctaagcatggagagaggttccaaaataacaagaaaaacatgga 28127582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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