View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9276-LTR4-TNT-insertion-1 (Length: 508)
Name: F9276-LTR4-TNT-insertion-1
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9276-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 35676743 - 35677234
Alignment:
| Q |
8 |
caaagaaacctctctagagcctactcataactcttcaaattttagaggaccaaatcaaggtttcccgagtcctacagatcagagaagaatatttccaaga |
107 |
Q |
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| T |
35676743 |
caaagaaacctctctagagcctactcataactcttcaaattttagaggaccaaatcaaggtttcccgagtcctacagatcagagaagaatatttccaaga |
35676842 |
T |
|
| Q |
108 |
caaatggagacaatgcttaaacagactactttctacatgactatagataatgatcataaataaccagcccaacaaaactcaagttcaactatcaacaaac |
207 |
Q |
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| T |
35676843 |
caaatggagacaatgcttaaacagactactttctacatgactatagataatgatcataaataaccagcccaacaaaactcaagttcaactatcaacaaac |
35676942 |
T |
|
| Q |
208 |
ctacgaaacaaaaattaggaaaagcaaaatgcttacaatagacaagttggaatacctcctggaagataacatgaaaatcacatgtaatggcaaattcacc |
307 |
Q |
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| T |
35676943 |
ctacgaaacaaaaattaggaaaagcaaaatgcttacaatagacaagttggaatacctcctggaagataacatgaaaatcacatgtaatggcaaattcacc |
35677042 |
T |
|
| Q |
308 |
ccatatccaacaaaaacggtcggcctgttcaacaagccaaccgatataattattcgttttgttgatttacaactttcttgaatcaattaacaaagagtat |
407 |
Q |
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| T |
35677043 |
ccatatccaacaaaaacggtcggcctgttcaacaagccaaccgatataattattcgttttgttgatttacaactttcttgaatcaattaacaaagagtat |
35677142 |
T |
|
| Q |
408 |
cttttgataaacataccgaacatttgtgaatgcatgctttattaattacagaaaatattaagtagtagtattagataaatcacacacaattg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35677143 |
cttttgataaacataccgaacatttgtgaatgcatgctttattaattacagaaaatattaagtagtagtattagataaatcacacacaattg |
35677234 |
T |
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