View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9276-LTR4-TNT-insertion-4 (Length: 411)

Name: F9276-LTR4-TNT-insertion-4
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9276-LTR4-TNT-insertion-4
F9276-LTR4-TNT-insertion-4
[»] chr5 (2 HSPs)
chr5 (8-194)||(5462428-5462614)
chr5 (258-403)||(5462219-5462364)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 5462614 - 5462428
Alignment:
8 caagtgactaccaagaagataggggnnnnnnnggaagagtaaataaataaatgaaaagttgttatagcttttgtttagccaatggtaagtgatgaattgg 107  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5462614 caagtgactaccaagaagataggggaaaaaaaggaagagtaaataaataaatgaaaagttgttatagcttttgtttagccaatggtaagtgatgaattgg 5462515  T
108 tgattgaaagttcacaaggattgtggtggtgaagtgaaagatgttacataagtggaacacaatttattattattcctagtgatagtg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5462514 tgattgaaagttcacaaggattgtggtggtgaagtgaaagatgttacataagtggaacacaatttattattattcctagtgatagtg 5462428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 258 - 403
Target Start/End: Complemental strand, 5462364 - 5462219
Alignment:
258 gttgtgactagaaatattgaatagttgaatactactacttgcacttgggataccttgctttctatgaattgagacagggttgcattgcattgagaatggg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5462364 gttgtgactagaaatattgaatagttgaatactactacttgcacttgggataccttgctttctatgaattgagacagggttgcattgcattgagaatggg 5462265  T
358 aaaatggttttgtgtgatttgatgggtatgtgtaagtaacaattgg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
5462264 aaaatggttttgtgtgatttgatgggtatgtgtaagtaacaattgg 5462219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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