View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9276-LTR4-TNT-insertion-8 (Length: 515)
Name: F9276-LTR4-TNT-insertion-8
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9276-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 39734256 - 39733758
Alignment:
| Q |
8 |
tgaagaagcttaaagacacatgaagtatgacatacttggatcgatattactgacggttggcattgttgcatgggtggtgcttgcaaaacaagtgaagtaa |
107 |
Q |
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| T |
39734256 |
tgaagaagcttaaagacacatgaagtatgacatacttggatcgatattactgacggttggcattgttgcatgggtggtgcttgcaaaacaagtgaagtaa |
39734157 |
T |
|
| Q |
108 |
tttcgtttgattttgatacattgtaactgagaatcacatctaatttgcactgccacattgtttattttacttttgagaaacgtgttccttcgttcttgac |
207 |
Q |
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| T |
39734156 |
tttcgtttgattttgatacattgtaactgagaatcacatctaatttgcactgccacattgtttattttacttttgagaaacgtgttccttcgttcttgac |
39734057 |
T |
|
| Q |
208 |
tgctatgtttttaacgttttaaccatttttacctatccatcttatgaaattttatcttattataattgggccgagtagttataatggtggtatgtagctt |
307 |
Q |
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| T |
39734056 |
tgctatgtttttaacgttttaaccatttttacctatccatcttatgaaattttatcttattataattgggccgagtagttataatggtggtatgtagctt |
39733957 |
T |
|
| Q |
308 |
gaaaattgttgttgacccttcgcttttggctgaaaaatgcctgaaaatgactcaaatgaccccatcagcagctaactgctgtggaatttaactggcggta |
407 |
Q |
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| T |
39733956 |
gaaaattgttgttgacccttcgcttttggctgaaaaatgcctgaaaatgactcaaatgaccccatcagcagctaactgctgtggaatttaactggcggta |
39733857 |
T |
|
| Q |
408 |
gttaattgccgatcttcaattccatccatcagcggttaagtgccgtggagcattgataatgtggagaacatgcttaccaacaggtttgtgaatcaattg |
506 |
Q |
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| T |
39733856 |
gttaattgccgatcttcaattccatccatcagcggttaagtgccgtggagcattgataatgtggagaacatgcttaccaacaggtttgtgaatcaattg |
39733758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 461
Target Start/End: Complemental strand, 40044347 - 40044274
Alignment:
| Q |
388 |
gtggaatttaactggcggtagttaattgccgatcttcaattccatccatcagcggttaagtgccgtggagcatt |
461 |
Q |
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|||||| ||||| || ||||||||| ||||||||| | |||| ||||||| || |||||||||||||||||||| |
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| T |
40044347 |
gtggaagttaaccggtggtagttaactgccgatctccgattctatccatcggcagttaagtgccgtggagcatt |
40044274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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