View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9282-LTR4-TNT-insertion-2 (Length: 484)
Name: F9282-LTR4-TNT-insertion-2
Description: F9282-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9282-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 132 - 474
Target Start/End: Complemental strand, 26779857 - 26779515
Alignment:
| Q |
132 |
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26779857 |
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata |
26779758 |
T |
|
| Q |
232 |
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcatcacatatgctttgtttgttatgaag |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26779757 |
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcattacatatgctttgtttgttatgaag |
26779658 |
T |
|
| Q |
332 |
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26779657 |
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt |
26779558 |
T |
|
| Q |
432 |
attgtctatttttgttttgcatgtgacaaacaaaaatatatta |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26779557 |
attgtctatttttgttttgcatgtgacaaacaaaaatatatta |
26779515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 132 - 474
Target Start/End: Complemental strand, 26781882 - 26781540
Alignment:
| Q |
132 |
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26781882 |
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata |
26781783 |
T |
|
| Q |
232 |
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcatcacatatgctttgtttgttatgaag |
331 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26781782 |
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcattacatatgctttgtttgttatgaag |
26781683 |
T |
|
| Q |
332 |
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26781682 |
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt |
26781583 |
T |
|
| Q |
432 |
attgtctatttttgttttgcatgtgacaaacaaaaatatatta |
474 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26781582 |
attgtctatttttgttttgcatgtgacaaacaaaaatatatta |
26781540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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