View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9285J-LTR4-TNT-insertion-1 (Length: 250)
Name: F9285J-LTR4-TNT-insertion-1
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 30026532 - 30026299
Alignment:
| Q |
7 |
accatcattataaatatggcataagttaaaagagataagattaagagagnnnnnnncaaatataaaaggattagagtcgtgtcataattatcataagaag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30026532 |
accatcattataaatatggcataagttaaaagagataagattaagagagaaaaaaacaaatataaaaggattagagtcgtgtcataattatcataagaag |
30026433 |
T |
|
| Q |
107 |
aattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgagattctattaaccactggtagccttcga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30026432 |
aattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgagattctattaaccactggtagccttcga |
30026333 |
T |
|
| Q |
207 |
atgtcatgcacaagaaaaaagagcagccaaatta |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
30026332 |
atgtcatgcacaagaaaaaagagcagccaaatta |
30026299 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 6931612 - 6931718
Alignment:
| Q |
98 |
cataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgagattctattaaccactggt |
197 |
Q |
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|||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| | | ||||||||||||| |
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| T |
6931612 |
cataagaaaaattgaatatttgaaggaacacaaaggcgccaaatccaattccaactttcttccccaagcaatgaagtctgagctcccattaaccactggt |
6931711 |
T |
|
| Q |
198 |
agccttc |
204 |
Q |
| |
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||||||| |
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| T |
6931712 |
agccttc |
6931718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 39169646 - 39169540
Alignment:
| Q |
98 |
cataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgagattctattaaccactggt |
197 |
Q |
| |
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|||||||| ||||| ||||| ||| ||||||||||||||||| |||||||||||||||||| | ||||| ||||| |||| | ||||||||||||||| |
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| T |
39169646 |
cataagaaaaattgaatatttgaaggaacacaaaggcgccaattccaattccaactttcttccccaagcaatgaagtctgagctcctattaaccactggt |
39169547 |
T |
|
| Q |
198 |
agccttc |
204 |
Q |
| |
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||||||| |
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| T |
39169546 |
agccttc |
39169540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 17161209 - 17161084
Alignment:
| Q |
79 |
agagtcgtgtcataattatcataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatga |
178 |
Q |
| |
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||||||||| || |||| ||||||||||| | ||||| ||| ||||||| ||| |||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
17161209 |
agagtcgtgacacaattgccataagaagaaccgaatatttgaaggaacacagaggtgccaaatccaattccaactttcttccccgagcaatgaagtatga |
17161110 |
T |
|
| Q |
179 |
gattctattaaccactggtagccttc |
204 |
Q |
| |
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| | | |||||||| ||||||||||| |
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|
| T |
17161109 |
gctcccattaaccattggtagccttc |
17161084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 42470063 - 42469957
Alignment:
| Q |
98 |
cataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgagattctattaaccactggt |
197 |
Q |
| |
|
|||||||| | ||| ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| | | ||||||||||||| |
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|
| T |
42470063 |
cataagaaaatttgaatatttgaaggaacacaaaggcgccaaatccaattccaactttcttccccaagcaatgaagtctgagctcccattaaccactggt |
42469964 |
T |
|
| Q |
198 |
agccttc |
204 |
Q |
| |
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||||||| |
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| T |
42469963 |
agccttc |
42469957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 28427274 - 28427168
Alignment:
| Q |
98 |
cataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgagattctattaaccactggt |
197 |
Q |
| |
|
|||||||| ||||| ||||| ||| ||||||||||||| |||||||||||||||||||||| | ||||| ||||| |||| | ||||||||||||| |
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| T |
28427274 |
cataagaaaaattgaatatttgaaggaacacaaaggcgtcaaatccaattccaactttcttccccaagcaatgaagtctgagctctcattaaccactggt |
28427175 |
T |
|
| Q |
198 |
agccttc |
204 |
Q |
| |
|
||||||| |
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| T |
28427174 |
agccttc |
28427168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 5265793 - 5265729
Alignment:
| Q |
113 |
atattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatg |
177 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||||| ||||| |||||||| ||||||| |
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|
| T |
5265793 |
atatttgaaggaacacaaagacgtcaaatccaattccaaccttcttccatgagcaacaaagtatg |
5265729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 34339763 - 34339881
Alignment:
| Q |
81 |
agtcgtgtcataattatcataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatgaga |
180 |
Q |
| |
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||||||| ||||||| ||| ||||||| | ||||| ||| ||||||| || ||| |||| |||||||||||||||| | ||||||||||||||| | |
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| T |
34339763 |
agtcgtggcataattgtcaatagaagaagtatatatttgaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagtatgggc |
34339862 |
T |
|
| Q |
181 |
ttctattaaccactggtag |
199 |
Q |
| |
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| | ||||||||||||||| |
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|
| T |
34339863 |
tcccattaaccactggtag |
34339881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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