View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9285J-LTR4-TNT-insertion-2 (Length: 401)
Name: F9285J-LTR4-TNT-insertion-2
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 1399737 - 1400119
Alignment:
| Q |
9 |
gaagcaccaacaactctaggattgggcgtgttcccgtggttgacatgcgtcggtgtctgacatccgtacaacatccatacaacaactcagacaagtatgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399737 |
gaagcaccaacaactctaggattgggcgtgttcctgtggttgacatgcgtcggtgtctgacatccgtacaacatccatacaacaactcagacaagtatgc |
1399836 |
T |
|
| Q |
109 |
caaaataaaaatatatatacagtggtgttggtgtcctattttctannnnnnnatattagcagtgttgaagtatttgcgtcgtgtctagtgtctgtcggag |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399837 |
caaaataaaaatatatatgcagtggtgttggtgtcctattttttatttttttatattagcagtgttgaagtatttgcgtcgtgtctagtgtctgtcggag |
1399936 |
T |
|
| Q |
209 |
tccctgcctcattcgctgaaaactgctcaacgaatgatattacttactttactctattacgtgaactgtccactttaaagagctaaatccatttcaaatg |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399937 |
tccctgcctcattcgctgaaaactgctcaacgaatgatattacttactttactctattacgtgaactgtccactttaaagagctaaatccatttcaaatg |
1400036 |
T |
|
| Q |
309 |
aacttataatgctcatttgttgattgaaaggttgtttatgctaagctttgaaattggttctacatagttcatggttgttatta |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1400037 |
aacttataatgctcatttgttgattgaaaggttgtttatgctaagctttgaaattggttctacatagttcatggttgttatta |
1400119 |
T |
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