View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9285J-LTR4-TNT-insertion-3 (Length: 483)
Name: F9285J-LTR4-TNT-insertion-3
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 42884506 - 42884971
Alignment:
| Q |
10 |
ctggtcacagatatttcgtgatccttttcgggtatctaaggatttgattcagtccccacccctgtactctttgtaatgtattcaataaccaaatcctact |
109 |
Q |
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| T |
42884506 |
ctggtcacagatatttcgtgatccttttcgggtatctaaggatttgattcagtccccacccctgtactctttgtaatgtattcaataaccaaatcctact |
42884605 |
T |
|
| Q |
110 |
acactctcctcatcaaacctctatttgtctcatttcatttgcatatggtttagttgtttgacctaaacctaaagaagtttgaggtcctagctaggtttga |
209 |
Q |
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| T |
42884606 |
acactctcctcatcaaacctctatttgtctcatttcatttgcatatggtttagttgtttgacctaaacctaaagaagtttgaggtcctagctaggtttga |
42884705 |
T |
|
| Q |
210 |
attcgaacgaaaagaactatatgttcaaacattgacggacatagtaaacactacacttttacgtttaaagagaatcattgaacggaaataaaactatata |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884706 |
attcgaacgaaaagaactatatgttcaaacattgacggatatagtaaacactacacttttacgtttaaagagaatcattgaacggaaataaaactatata |
42884805 |
T |
|
| Q |
310 |
attgaactttgatggatatagtaaacacacacttttacgcttataaggaatcataatatcataattatttagtcaaacaaaccactcatcaaaacttgag |
409 |
Q |
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| T |
42884806 |
attgaactttgatggatatagtaaacacacacttttacgcttataaggaatcataatatcataattatttagtcaaacaaaccactcatcaaaacttgag |
42884905 |
T |
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| Q |
410 |
gcgctcgttgttttgaataccgataagttaagacatataaagaaaactataaaattaaaattatta |
475 |
Q |
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| T |
42884906 |
gcgctcgttgttttgaataccgataagttaagacatataaagaaaactataaaattaaaattatta |
42884971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 22984416 - 22984238
Alignment:
| Q |
46 |
taaggatttgattcagtccccacccctgtactctttgtaatgtattcaataaccaaatcctactacactctcctcatcaaacctctatttgtctcatttc |
145 |
Q |
| |
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||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
22984416 |
taaggatttgattcagtcccctcccctctactc-----attgtattcaataaccaaatcctactacactctcatcatcaaatctctatctgtctcatttg |
22984322 |
T |
|
| Q |
146 |
atttgcatatggtttagttgtttgacctaaacctaaagaagtttgaggtcctagctaggtttgaattcgaacgaaaagaactatatgtt |
234 |
Q |
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||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||| ||||||||||| |
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| T |
22984321 |
atttgtatatgg-ttagttgtttgacctaaacctagagaagtttgaggtc----ttaggtttaaattcgaaccaaaaaaactatatgtt |
22984238 |
T |
|
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