View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9295-LTR4-TNT-insertion-1 (Length: 115)
Name: F9295-LTR4-TNT-insertion-1
Description: F9295-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9295-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 9e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 9e-49
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 26634035 - 26634132
Alignment:
| Q |
8 |
cccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtcattttcctttgcatgagttgtgtgtatagtgatatta |
105 |
Q |
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| T |
26634035 |
cccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtcattttcctttgcatgagttgtgtgtatagtgatatta |
26634132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26611385 - 26611478
Alignment:
| Q |
8 |
cccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtcattttcctttgcatgagttgtgtgtatagtgat |
101 |
Q |
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| T |
26611385 |
cccaattgtggtaccacatatatactgtgaattgggagttacaataaatacaaatggggtcattttcctttgcatgagttgtgtgtatagtgat |
26611478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 26626577 - 26626675
Alignment:
| Q |
8 |
cccaattgtggtaccacatatatactgtgaattgggagttacaataaatgcaaatggggtcattttcctttgcatgagttgtgtgtatagtgatattag |
106 |
Q |
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| T |
26626577 |
cccaattgtggtaccacatatatactttgaattgggagttacaataaatgcaaatggggtcattttcctttgcattagttgtgtgtatagtgatgttag |
26626675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 26642012 - 26642052
Alignment:
| Q |
60 |
aatggggtcattttcctttgcatgagttgtgtgtatagtga |
100 |
Q |
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| T |
26642012 |
aatggggtaatttttatttgcatgagttgtgtgtatagtga |
26642052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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