View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9295-LTR4-TNT-insertion-5 (Length: 680)
Name: F9295-LTR4-TNT-insertion-5
Description: F9295-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9295-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 11 - 671
Target Start/End: Complemental strand, 42946235 - 42945575
Alignment:
| Q |
11 |
gatcaggtgccgtaatttcttccctaacctgattcttaaaatcaacaaccatcttcatgtcacatactatcaatgtctcacttcaataatagatggaagg |
110 |
Q |
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| T |
42946235 |
gatcaggtgccgtaatttcttccctaacctgattcttaaaatcaacaaccatcttcatgtcacatactatcaatgtctcacttcaataatagatggaagg |
42946136 |
T |
|
| Q |
111 |
agacaacaaagtagttgtcctgctttcatttcctaacataatactaatatctatgtccctgttgcctatgaaacttctaaaaaccacaaaacacactaag |
210 |
Q |
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| T |
42946135 |
agacaacaaagtagttgtcctgctttcatttcctaacataatactaatatctatgtccctgttgcctatgaaacttctaaaaaccacaaaacacactaag |
42946036 |
T |
|
| Q |
211 |
ccttaccttcttttctgtcacaaaatttgagtctctcatttagtgctctcaatttagaagaaacattccaactattcatgttggaaaacatcacaagcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42946035 |
ccttaccttcttttctgtcacaaaatttgagtctctcatttagtgctctcaatttagaagaaacattccaactattcatgttggaaaacatcacaagcaa |
42945936 |
T |
|
| Q |
311 |
ggtaaaacagtacatcaaaatcattttgaaccttccttgtcatgttttcttcatagtttttgtgcttctataacaaagtggttgagttgagaacttttcc |
410 |
Q |
| |
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| T |
42945935 |
ggtaaaacagtacatcaaaatcattttgaaccttccttgtcatgttttcttcatagtttttgtgcttctataacaaagtggttgagttgagaacttttcc |
42945836 |
T |
|
| Q |
411 |
gatctcaagttcgctgcaccgcttttctaaggtattgtctactttggatcaaaaccattgaatctacaatggctctccgtcaacgcctccaccgcctttt |
510 |
Q |
| |
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| T |
42945835 |
gatctcaagttcgctgcaccgcttttctaaggtattgtctactttggatcaaaaccattgaatctacaatggctctccgtcaacgcctccaccgcctttt |
42945736 |
T |
|
| Q |
511 |
gcttgacgcagattcaacttcaacaactgcatcaggttacatgaataggtcaagggagcctttcacaaccccgggtgattcaaattttgacaccaacatg |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42945735 |
gcttgacgcagattcaacttcaacaactgcatcaggttacatgaataggtcaagggagcctttcacaaccccgggtgattcaaattttgacaccaacatg |
42945636 |
T |
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| Q |
611 |
gtgtttatcttggcagctttactttgtgcacttatttttgcattaggactcaactcaattg |
671 |
Q |
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| T |
42945635 |
gtgtttatcttggcagctttactttgtgcacttatttttgcattaggactcaactcaattg |
42945575 |
T |
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