View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9296-LTR4-TNT-insertion-5 (Length: 178)
Name: F9296-LTR4-TNT-insertion-5
Description: F9296-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9296-LTR4-TNT-insertion-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 6e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 6935169 - 6935331
Alignment:
| Q |
7 |
agttcaaaaatataaatttggacaaaattgccacaattctatcaaattcacccggaatccaaacaacatgcacatagggagtgatttacctaaagaggaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6935169 |
agttcaaaaatataaatttggacaaaattgccacaattctatcaaattcacccggaatccaaacaacatgcacatagggagtgatttacctaaagaggaa |
6935268 |
T |
|
| Q |
107 |
aacgatgtgctgggaactaaaaagacaaatctgagaggaaattgaatcaccatactacaattg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6935269 |
aacgatgtgctgggaactaaaaagacaaatctgagaggaaattgaatcaccatactgcaattg |
6935331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 50302173 - 50302087
Alignment:
| Q |
7 |
agttcaaaaatataaatttggacaaaattgccacaattctatcaaattcacccggaatccaaacaacatgcacatagggagtgatttacc |
96 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| |||||||||| ||||||| ||||||| |
|
|
| T |
50302173 |
agttcaaaaatataaattttgacaaaattgccacaattcaatcaaattcacacggaaccca---aacatgcacaaagggagtaatttacc |
50302087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 6799275 - 6799211
Alignment:
| Q |
7 |
agttcaaaaatataaatttggacaaaattgccacaattctatcaaattcacccggaatccaaaca |
71 |
Q |
| |
|
||||||||| || |||||| ||||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
6799275 |
agttcaaaagtacaaattttgacaaaattaccacaattctatcaaattcaccgggaatcaaaaca |
6799211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 6410687 - 6410625
Alignment:
| Q |
9 |
ttcaaaaatataaatttggacaaaattgccacaattctatcaaattcacccggaatccaaaca |
71 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
6410687 |
ttcaaaagtataaattttgacaaaattatcacaattctatcaaattcacctggaatcaaaaca |
6410625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 6525489 - 6525438
Alignment:
| Q |
7 |
agttcaaaaatataaatttggacaaaattgccacaattctatcaaattcacc |
58 |
Q |
| |
|
||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
6525489 |
agttcaaaagtataaattttgacaaaattaccacgattctatcaaattcacc |
6525438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 6799175 - 6799135
Alignment:
| Q |
84 |
ggagtgatttacctaaagaggaaaacgatgtgctgggaact |
124 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
6799175 |
ggagtaatttacctaaataggaaaaagatgtgctgggaact |
6799135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 49619197 - 49619265
Alignment:
| Q |
99 |
aagaggaaaacgatgtgctgggaactaaaaagacaaatctgagaggaaattgaatcaccatactacaat |
167 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
49619197 |
aagaggaagaagatgtgcagggaactaaaaagataaatctgagcagaaattgaatcaccacacttcaat |
49619265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 39382494 - 39382447
Alignment:
| Q |
121 |
aactaaaaagacaaatctgagaggaaattgaatcaccatactacaatt |
168 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
39382494 |
aactaaaaagataaatctgagcagaaattgaatcaccacactccaatt |
39382447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 427 times since January 2019
Visitors: 8062