View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9301-LTR4-TNT-insertion-10 (Length: 122)

Name: F9301-LTR4-TNT-insertion-10
Description: F9301-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9301-LTR4-TNT-insertion-10
F9301-LTR4-TNT-insertion-10
[»] chr4 (1 HSPs)
chr4 (10-113)||(53560474-53560577)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 53560474 - 53560577
Alignment:
10 aattaatcaaaatgtgcatgagagactagtaagtacaaaagagagtaatgttgagggggtccgaatcgctcattttaaacttggatttaaaaattgcaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
53560474 aattaatcaaaatgtgcatgagagactagtaagtacaaaagagagtaatgttgagggggtccgaatcgctcattttaaacttggatttaaaaattgcaca 53560573  T
110 attg 113  Q
    ||||    
53560574 attg 53560577  T

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