View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9301-LTR4-TNT-insertion-6 (Length: 543)
Name: F9301-LTR4-TNT-insertion-6
Description: F9301-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9301-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Original strand, 10550032 - 10550557
Alignment:
| Q |
8 |
cttaaccagacagttttttcacctaaattcctgaacttaactgaaactcccgtgcatttggttgctgtcaagattaaaaagaagctatagagaaagtaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10550032 |
cttaaccagacagttttttcacctaaattcctgaacttaactgaaactcccgtgcatttggttgctgtcaagattaaaaagaagctatagagaaagtaag |
10550131 |
T |
|
| Q |
108 |
aaatagacagtagagcgtagcatcattaggaaactccactttatatcatatatttcaaaggaannnnnnnnaaactccaaaactttattatggagagtaa |
207 |
Q |
| |
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| T |
10550132 |
aaatagacagtagagcgtagcatcattaggaaactccactttatatcatatatttcaaaggaattttttttaaactccaaaactttattatggagagtaa |
10550231 |
T |
|
| Q |
208 |
ggactattaacaaatcaccaagaaattattcactctaacaaatgtagaaaaaacattcatagaaactacannnnnnnccccgataaatcatagaaacttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10550232 |
ggactattaacaaatcaccaagaaattattcactctaacaaatgtagaaaaaacattcatagaaactacatttttttccccgataaatcatagaaacttc |
10550331 |
T |
|
| Q |
308 |
atgttgattttttcctcgaatcgttttcccattcccacaagaggttcttcatagaccttctgtccacttgatcacnnnnnnnnnnnncaagtccaaatat |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10550332 |
atgttgattttttcctcgaatcgttttcccattcccacaagaggttcttcatagaccttctgtccacttgatcacaaaaaataaaaacaagtccaaatat |
10550431 |
T |
|
| Q |
408 |
atgaaccctaatttcgaagcaaggttgagaagatatataaagacggagtgatcacgattaacaaaggaagatgggagggagtacgcacgatcaactctac |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10550432 |
atgaaccctaatttcgaagcaaggttgagaagatatataaagacggagtgatcacgattaacaaaggaagatgggagggagtacgcacgatcaactctac |
10550531 |
T |
|
| Q |
508 |
attcaatataacttaaaaataaatta |
533 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
10550532 |
attcaatataacttaaaaataaatta |
10550557 |
T |
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