View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9301-LTR4-TNT-insertion-9 (Length: 199)
Name: F9301-LTR4-TNT-insertion-9
Description: F9301-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9301-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 30666059 - 30666240
Alignment:
| Q |
8 |
ccatatacatttgagtaagaacgtgtttgtacccgtaactttttnnnnnnnggaaaatgctaacggcctctagagcactgattgagaaataaatatagta |
107 |
Q |
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| T |
30666059 |
ccatatacatttgagtaagaacgtgtttgtacccgtaactttttaaaaaaaggaaaatgctaacggcctctagagcactgattgagaaataaatatagta |
30666158 |
T |
|
| Q |
108 |
aagttagcttaaattcgtgttgtgaaactcttaaaagtttacaaaatgttttttcaatataaattttacccttgtgaaatta |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666159 |
aagttagcttaaattcgtgttgtgaaactcttaaaagtttacaaaatgttttttcaatataaattttacccttgtgaaatta |
30666240 |
T |
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