View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9302-LTR4-TNT-insertion-3 (Length: 594)
Name: F9302-LTR4-TNT-insertion-3
Description: F9302-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] F9302-LTR4-TNT-insertion-3 |
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[»] scaffold0010 (1 HSPs) |
| | |
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[»] scaffold0018 (2 HSPs) |
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[»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 7 - 585
Target Start/End: Complemental strand, 31201182 - 31200604
Alignment:
Q |
7 |
agtaggatccccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataacaaattaattacatt |
106 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31201182 |
agtaggatctccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataacaaattaattacatt |
31201083 |
T |
|
Q |
107 |
gtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaagggtgtagaattact |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31201082 |
gtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaagggtgtagaattact |
31200983 |
T |
|
Q |
207 |
atttgctacgggttcaagaaaggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31200982 |
atttgctacgggttcaagaaaggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgg |
31200883 |
T |
|
Q |
307 |
gtgtacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttactt |
406 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31200882 |
gtgtacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttactt |
31200783 |
T |
|
Q |
407 |
aatttacattgtactaaaatgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattta |
506 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31200782 |
aatttacattgtactaaaatgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattta |
31200683 |
T |
|
Q |
507 |
tcttccatttcattatgcgttatattgttcacaacctccatagcaaaaaatgatcgttaaacagttgttgtgacaattg |
585 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31200682 |
tcttccatttcattatgcgttatattgttcacaacctccatagcaaaaaatgatcgttaaacagttgttgtgacaattg |
31200604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 39051324 - 39051413
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccattt |
516 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||||||| ||| ||||||||||| |||| |||||| |
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|
T |
39051324 |
gttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccattt |
39051413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 31294053 - 31293970
Alignment:
Q |
310 |
tacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaaa |
393 |
Q |
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|
|||||| ||||||||||||||||||| |||||||||||| | |||| | | | |||||||||||||| ||||||| |||||| |
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|
T |
31294053 |
tacccaatggcgttgccaggaccctgggtcagggggttcaaacctttgtaatataattaataattataataatatattcaaaaa |
31293970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 42629190 - 42629110
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttga--ttaataattataacaatatatacaaaa |
392 |
Q |
|
|
||||||||||||||||||| | | |||||||||||| |||||||| ||| | ||||||||||||| |||||||| |||| |
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|
T |
42629190 |
cagtggcgttgccaggaccttaaggcagggggttcaaacttttgaattttaattttaataattataataatatatataaaa |
42629110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 285651 - 285702
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatat |
477 |
Q |
|
|
|||||| |||| ||||| ||||||||||||||||| |||||||||| ||||| |
|
|
T |
285651 |
tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat |
285702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 17193510 - 17193583
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatata |
387 |
Q |
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|||||||||||| |||||||| | |||||||||||| ||||||| |||| |||||||||||||| |||||||| |
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|
T |
17193510 |
cagtggcgttgctaggaccctagatcagggggttcaaacttttgacctttaattaataattataataatatata |
17193583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 509
Target Start/End: Complemental strand, 10354023 - 10353940
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatct |
509 |
Q |
|
|
|||||||| |||| ||||||||||||||||| ||||| |||| | | |||||||| ||| ||||||| ||||||||||| |||| |
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|
T |
10354023 |
tgttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatct |
10353940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 33900106 - 33900041
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaa |
491 |
Q |
|
|
|||||||||||||||||||||||||||||| || | | ||||| |||||||||| |||||||||| |
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|
T |
33900106 |
tgttgaataatcaactcattatcaatgttgccggatagatctcgtttaatataaaccacaagacaa |
33900041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 29638900 - 29638812
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | ||||||||| || ||||||| ||||||||| | |||| ||||| |
|
|
T |
29638900 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccatt |
29638812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 30329249 - 30329205
Alignment:
Q |
306 |
ggtgtacccagtggcgttgccaggaccctgaaccagggggttcaa |
350 |
Q |
|
|
|||| ||||| ||||||||||||||||||| |||||||||||||| |
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|
T |
30329249 |
ggtgaacccactggcgttgccaggaccctggaccagggggttcaa |
30329205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 490
Target Start/End: Original strand, 1623346 - 1623393
Alignment:
Q |
443 |
attatcaatgttgtcgaacatatctcttttaatataagtcacaagaca |
490 |
Q |
|
|
||||||||||||||||||||||||| || |||||||| |||| ||||| |
|
|
T |
1623346 |
attatcaatgttgtcgaacatatcttttctaatataaatcaccagaca |
1623393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 38475975 - 38475912
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagaca |
490 |
Q |
|
|
|||||||||||||||||||||||| || | ||||| |||||| | ||| |||||||||||||| |
|
|
T |
38475975 |
gttgaataatcaactcattatcaacctttttgaacacatctctctcaatgtaagtcacaagaca |
38475912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 456
Target Start/End: Original strand, 1436911 - 1436940
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgt |
456 |
Q |
|
|
|||||||||||||||||||||||||||||| |
|
|
T |
1436911 |
gttgaataatcaactcattatcaatgttgt |
1436940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 15007004 - 15007053
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaacttt |
363 |
Q |
|
|
|||| |||||||||||||||| || |||||||||||| | |||||||||| |
|
|
T |
15007004 |
cagtagcgttgccaggaccctaaagcagggggttcaaacctttgaacttt |
15007053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 521
Target Start/End: Original strand, 250355 - 250449
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta |
521 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||| |||| |
|
|
T |
250355 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgatta |
250449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 3694151 - 3694240
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccattt |
516 |
Q |
|
|
||||||||||||| |||| ||||| ||||| || |||||| | |||||||||||||||||||| ||||||||||| |||| |||||| |
|
|
T |
3694151 |
gttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccattt |
3694240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 35700321 - 35700357
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaa |
350 |
Q |
|
|
|||||||||||||||||||||| |||||||||||||| |
|
|
T |
35700321 |
cagtggcgttgccaggaccctggaccagggggttcaa |
35700357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 521
Target Start/End: Complemental strand, 14294457 - 14294362
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaat-aattcatccatttatcttccatttcatta |
521 |
Q |
|
|
||||||||||| | | |||||||||| ||||||||| |||||| ||||||||| | || ||| ||| | |||||||||||||| || |||| |||| |
|
|
T |
14294457 |
gttgaataatccattaattatcaatggtgtcgaacacatctctcttaatataacttacgagagaatcagttcatccatttatcctcaatttgatta |
14294362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 377
Target Start/End: Complemental strand, 26998230 - 26998195
Alignment:
Q |
342 |
ggggttcaatcttttgaactttgattaataattata |
377 |
Q |
|
|
||||||||| |||||||||||||||||||||||||| |
|
|
T |
26998230 |
ggggttcaaacttttgaactttgattaataattata |
26998195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 33996204 - 33996167
Alignment:
Q |
313 |
ccagtggcgttgccaggaccctgaaccagggggttcaa |
350 |
Q |
|
|
||||||||||||| ||||||||| |||||||||||||| |
|
|
T |
33996204 |
ccagtggcgttgctaggaccctggaccagggggttcaa |
33996167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 38942 - 38858
Alignment:
Q |
308 |
tgtacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaa |
392 |
Q |
|
|
|||| ||| ||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| ||||||||||||| |
|
|
T |
38942 |
tgtaaccaatggcgttgccaggaccctgggttagggggttcaaaatttaaaactttaattaataattataataatatatacaaaa |
38858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 38770 - 38677
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta |
521 |
Q |
|
|
|||||| |||| ||||| ||||||||||||||||| |||||||||| ||||| ||||| ||||||| ||| || ||| ||||||| ||| |||| |
|
|
T |
38770 |
tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta |
38677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 19142060 - 19141972
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| ||||| |
|
|
T |
19142060 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt |
19141972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 41500069 - 41500157
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| ||||| |
|
|
T |
41500069 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt |
41500157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 521
Target Start/End: Complemental strand, 43405627 - 43405533
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta |
521 |
Q |
|
|
|||||||||||||||||| |||||| |||||| ||||||||| | ||||||||| || |||||| |||||| || | |||| |||||| |||| |
|
|
T |
43405627 |
gttgaataatcaactcatcatcaattttgtcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttatta |
43405533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 28523903 - 28523839
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataa |
378 |
Q |
|
|
||||||||||||||||||||| ||||||||||| |||| ||||||| || ||||||||||| |
|
|
T |
28523903 |
cagtggcgttgccaggaccctaggttagggggttcaacctttggaactttaatcaataattataa |
28523839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 675658 - 675746
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| ||||| |
|
|
T |
675658 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt |
675746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 27836828 - 27836735
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta |
521 |
Q |
|
|
|||||| |||| ||||| ||||||||||||||||| |||||||||| ||||| ||||| ||||||| ||| || ||| ||||||| ||| |||| |
|
|
T |
27836828 |
tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta |
27836735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 27836993 - 27836915
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaa |
392 |
Q |
|
|
||||||||||| |||||| ||| ||||||||||| ||| |||||| |||||||||||||| ||||||||||||| |
|
|
T |
27836993 |
cagtggcgttgtcaggactctggggtagggggttcaaaatttaaaactttaattaataattataataatatatacaaaa |
27836915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 35765079 - 35765025
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgatta |
368 |
Q |
|
|
|||||||||||||||||||| || ||| |||||||| |||||||||||| |||| |
|
|
T |
35765079 |
cagtggcgttgccaggaccccgagtcagcgggttcaaacttttgaactttaatta |
35765025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 46764244 - 46764190
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgatta |
368 |
Q |
|
|
|||||||||||||||||||| || ||| |||||||| |||||||||||| |||| |
|
|
T |
46764244 |
cagtggcgttgccaggaccccgagtcagcgggttcaaacttttgaactttaatta |
46764190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 48022244 - 48022277
Alignment:
Q |
317 |
tggcgttgccaggaccctgaaccagggggttcaa |
350 |
Q |
|
|
||||||||||||||||||| |||||||||||||| |
|
|
T |
48022244 |
tggcgttgccaggaccctggaccagggggttcaa |
48022277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 10440823 - 10440787
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaa |
350 |
Q |
|
|
||||||||||||||||| |||| |||||||||||||| |
|
|
T |
10440823 |
cagtggcgttgccaggatcctggaccagggggttcaa |
10440787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 34008778 - 34008850
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatat |
386 |
Q |
|
|
||||||||||| |||||||||| |||||||||||| | |||| | | | |||||||||||||| ||||||| |
|
|
T |
34008778 |
cagtggcgttgtcaggaccctgggtcagggggttcaaacctttgtaatataattaataattataataatatat |
34008850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 4816285 - 4816197
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| ||||| |
|
|
T |
4816285 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt |
4816197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 368
Target Start/End: Complemental strand, 43591202 - 43591147
Alignment:
Q |
313 |
ccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgatta |
368 |
Q |
|
|
||||||||||||||||||||| ||| ||| |||||||| |||||||||||| |||| |
|
|
T |
43591202 |
ccagtggcgttgccaggaccccgaatcagcgggttcaaacttttgaactttaatta |
43591147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 501
Target Start/End: Complemental strand, 22581783 - 22581709
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatcc |
501 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| |||||||| |
|
|
T |
22581783 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcc |
22581709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 41003111 - 41003181
Alignment:
Q |
317 |
tggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatata |
387 |
Q |
|
|
|||||||||||||| |||||| ||| |||||||| ||||||| ||| |||||||| ||||| |||||||| |
|
|
T |
41003111 |
tggcgttgccaggatcctgaatcagagggttcaaaattttgaattttaattaataactataataatatata |
41003181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 578
Target Start/End: Original strand, 8265646 - 8265795
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgcg |
525 |
Q |
|
|
||||||| ||||||| ||||||||| ||||| || || ||||| |||||||||||||||||||| |||||| |||| ||||| ||||| |||| | |
|
|
T |
8265646 |
tgttgaacaatcaacctattatcaatattgtctaatatgtctctc--aatataagtcacaagacaatcattcattcattcatctt-catttgattacaca |
8265742 |
T |
|
Q |
526 |
ttatattgttcacaacctccatagcaaaaaatgatcgttaaacagttgttgtg |
578 |
Q |
|
|
| || | |||||||||| ||||||| |||| || |||| |||||||||||| |
|
|
T |
8265743 |
atctagttttcacaaccttcatagcataaaaggaccgtttgacagttgttgtg |
8265795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 32864432 - 32864396
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaa |
350 |
Q |
|
|
|||||||||||||||||||||| |||||||||||||| |
|
|
T |
32864432 |
cagtggcgttgccaggaccctggaccagggggttcaa |
32864396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 34059854 - 34059766
Alignment:
Q |
427 |
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
|||||||||||||||||| |||||| ||||| || |||||| | ||||||||| || ||||||| ||||||||| | |||| ||||| |
|
|
T |
34059854 |
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccatt |
34059766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Complemental strand, 10069300 - 10069247
Alignment:
Q |
462 |
atatctcttttaatataagtcacaagacaataattcatccatttatcttccatt |
515 |
Q |
|
|
||||| |||| |||||||||||| ||||||| ||||||||||| ||| |||||| |
|
|
T |
10069300 |
atatccctttcaatataagtcactagacaatcattcatccattcatcctccatt |
10069247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 12371580 - 12371616
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaaca |
462 |
Q |
|
|
||||||||||||||||||| |||||||||| |||||| |
|
|
T |
12371580 |
tgttgaataatcaactcatcatcaatgttgccgaaca |
12371616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 6863462 - 6863400
Alignment:
Q |
325 |
ccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatata |
387 |
Q |
|
|
|||||||| ||| || ||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
T |
6863462 |
ccaggaccttgagtcacggggttcaaacttttaaactttgattaataattatagtaatatata |
6863400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 524
Target Start/End: Complemental strand, 40142312 - 40142214
Alignment:
Q |
426 |
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgc |
524 |
Q |
|
|
|||||||||||||||||| |||||||||||| |||| | || | ||||||||||| ||||||| |||||||| | |||| |||||| ||||||| |
|
|
T |
40142312 |
tgttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgc |
40142214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 3921869 - 3921938
Alignment:
Q |
315 |
agtggcgttgccaggaccctgaacca-gggggttcaatcttttgaactttgattaataattataacaata |
383 |
Q |
|
|
||||||||||||||||||||| | || |||||||||| ||||||| | || |||||||||| ||| |||| |
|
|
T |
3921869 |
agtggcgttgccaggaccctggatcaggggggttcaaacttttgatccttaattaataattgtaataata |
3921938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 27910020 - 27910069
Alignment:
Q |
314 |
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaacttt |
363 |
Q |
|
|
||||||||||||||||||||| | |||||||||||| | |||||||||| |
|
|
T |
27910020 |
cagtggcgttgccaggaccctagagcagggggttcaaacctttgaacttt |
27910069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 2869097 - 2869033
Alignment:
Q |
313 |
ccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattata |
377 |
Q |
|
|
|||||||||||||||||| |||| |||||| | ||| ||||||||||| ||||||||||||| |
|
|
T |
2869097 |
ccagtggcgttgccaggaacctgtgtcaggggttcaaattttttgaactttaattaataattata |
2869033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 418474 - 418429
Alignment:
Q |
317 |
tggcgttgccaggaccctgaaccagggggttcaatcttttgaactt |
362 |
Q |
|
|
||||||||||||||||||| | |||||||||||| ||||| ||||| |
|
|
T |
418474 |
tggcgttgccaggaccctggatcagggggttcaaacttttaaactt |
418429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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