View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9303-LTR4-TNT-insertion-2 (Length: 155)

Name: F9303-LTR4-TNT-insertion-2
Description: F9303-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9303-LTR4-TNT-insertion-2
F9303-LTR4-TNT-insertion-2
[»] chr2 (12 HSPs)
chr2 (7-104)||(816312-816409)
chr2 (20-62)||(11543881-11543923)
chr2 (25-65)||(13491027-13491067)
chr2 (23-62)||(10720453-10720492)
chr2 (24-66)||(22999075-22999117)
chr2 (23-67)||(4772303-4772346)
chr2 (23-67)||(18055858-18055902)
chr2 (23-67)||(19134601-19134645)
chr2 (23-67)||(42200947-42200990)
chr2 (20-67)||(13268057-13268103)
chr2 (23-62)||(28855499-28855537)
chr2 (20-67)||(40592313-40592359)
[»] chr4 (16 HSPs)
chr4 (22-67)||(55853398-55853443)
chr4 (23-65)||(24870598-24870640)
chr4 (24-65)||(37759429-37759470)
chr4 (20-64)||(32057805-32057849)
chr4 (23-56)||(17480942-17480975)
chr4 (24-65)||(30189142-30189183)
chr4 (23-68)||(42412073-42412117)
chr4 (23-67)||(7512767-7512810)
chr4 (23-67)||(13632089-13632133)
chr4 (21-65)||(13849357-13849401)
chr4 (23-67)||(21156040-21156084)
chr4 (23-67)||(28010136-28010179)
chr4 (23-67)||(35273391-35273435)
chr4 (20-67)||(3084324-3084370)
chr4 (24-67)||(4431977-4432020)
chr4 (20-67)||(24712088-24712134)
[»] chr6 (9 HSPs)
chr6 (23-67)||(10330804-10330848)
chr6 (23-67)||(8977154-8977198)
chr6 (23-67)||(16496737-16496781)
chr6 (20-56)||(2301461-2301496)
chr6 (23-67)||(28533440-28533484)
chr6 (23-67)||(31444375-31444419)
chr6 (20-67)||(4083587-4083633)
chr6 (20-67)||(8939626-8939672)
chr6 (20-67)||(10181045-10181091)
[»] chr5 (16 HSPs)
chr5 (23-67)||(1833404-1833448)
chr5 (23-67)||(40318870-40318914)
chr5 (23-67)||(41408626-41408670)
chr5 (23-66)||(8595572-8595615)
chr5 (20-62)||(22792192-22792234)
chr5 (23-67)||(21728660-21728704)
chr5 (23-67)||(23074729-23074773)
chr5 (23-67)||(24406562-24406606)
chr5 (24-66)||(11408373-11408415)
chr5 (23-65)||(26526514-26526556)
chr5 (23-55)||(34856592-34856624)
chr5 (20-67)||(12262870-12262917)
chr5 (20-67)||(12707958-12708004)
chr5 (24-63)||(16627574-16627613)
chr5 (23-62)||(38682933-38682971)
chr5 (20-67)||(42383134-42383181)
[»] chr3 (18 HSPs)
chr3 (23-67)||(11751211-11751255)
chr3 (22-66)||(10661984-10662028)
chr3 (23-67)||(28171064-28171108)
chr3 (23-67)||(47069006-47069050)
chr3 (23-62)||(40840173-40840212)
chr3 (23-57)||(3440735-3440769)
chr3 (23-56)||(9583508-9583541)
chr3 (22-67)||(37928837-37928882)
chr3 (20-52)||(1562809-1562841)
chr3 (23-67)||(4976793-4976836)
chr3 (23-67)||(7131578-7131622)
chr3 (23-67)||(10071601-10071645)
chr3 (23-67)||(11029663-11029707)
chr3 (23-67)||(29212150-29212193)
chr3 (23-67)||(48555836-48555879)
chr3 (20-67)||(15003628-15003674)
chr3 (20-67)||(41464664-41464710)
chr3 (20-67)||(44037526-44037572)
[»] chr7 (19 HSPs)
chr7 (22-65)||(6328258-6328301)
chr7 (25-65)||(45957421-45957461)
chr7 (24-67)||(47182803-47182845)
chr7 (20-65)||(8059846-8059891)
chr7 (20-65)||(22702396-22702441)
chr7 (23-67)||(6596542-6596585)
chr7 (23-67)||(33228699-33228743)
chr7 (23-67)||(40013263-40013307)
chr7 (23-67)||(40677017-40677061)
chr7 (23-67)||(47086385-47086429)
chr7 (23-62)||(1869820-1869859)
chr7 (22-65)||(6344368-6344411)
chr7 (23-62)||(7312538-7312576)
chr7 (26-65)||(12964581-12964620)
chr7 (21-56)||(18110443-18110478)
chr7 (23-62)||(34708678-34708717)
chr7 (20-55)||(44136210-44136245)
chr7 (20-67)||(45041815-45041861)
chr7 (20-67)||(46274947-46274994)
[»] chr1 (11 HSPs)
chr1 (23-66)||(7204593-7204636)
chr1 (23-67)||(270406-270450)
chr1 (20-67)||(23225372-23225419)
chr1 (20-66)||(44836200-44836246)
chr1 (20-65)||(15331144-15331188)
chr1 (23-67)||(43086556-43086599)
chr1 (23-67)||(49632554-49632598)
chr1 (20-67)||(5598301-5598347)
chr1 (23-62)||(10430424-10430463)
chr1 (23-62)||(39606409-39606448)
chr1 (23-66)||(45611546-45611589)
[»] chr8 (20 HSPs)
chr8 (23-66)||(33128250-33128293)
chr8 (23-65)||(40216780-40216823)
chr8 (23-65)||(1522694-1522736)
chr8 (23-65)||(12320988-12321030)
chr8 (24-62)||(30089963-30090001)
chr8 (23-67)||(6229265-6229309)
chr8 (23-67)||(19649583-19649626)
chr8 (23-67)||(24654974-24655017)
chr8 (23-67)||(25063339-25063383)
chr8 (23-67)||(25250785-25250828)
chr8 (23-67)||(37708532-37708575)
chr8 (21-56)||(3673926-3673961)
chr8 (20-67)||(4312133-4312179)
chr8 (20-67)||(4694769-4694815)
chr8 (20-67)||(8547212-8547258)
chr8 (25-64)||(11109944-11109983)
chr8 (23-70)||(28183796-28183843)
chr8 (20-67)||(34711637-34711683)
chr8 (20-67)||(36586482-36586528)
chr8 (20-67)||(37817376-37817422)
[»] scaffold0061 (1 HSPs)
scaffold0061 (23-67)||(8944-8987)
[»] scaffold0024 (1 HSPs)
scaffold0024 (23-67)||(160447-160491)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 1e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 816409 - 816312
Alignment:
7 accatggtcatgacgacctaacaattttggcatttttgccagttgagctatgacttatggaactcaaaattcgatttctaagtcagagatttctgttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
816409 accatggtcatgacgacctaacaattttggcatttttgccagttgagctatgacttatggaactcaaaattcgatttctaagtcagagatttctgttg 816312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 11543881 - 11543923
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgactt 62  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
11543881 cgacctaacaatttcggcatttttgccagttgagctaggactt 11543923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 13491067 - 13491027
Alignment:
25 taacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||| || ||||||||||||||||||||||||||||    
13491067 taacaatttcggtatttttgccagttgagctatgacttatg 13491027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 10720492 - 10720453
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    ||||||||||||  ||||||||||||||||||||||||||    
10720492 cctaacaattttaacatttttgccagttgagctatgactt 10720453  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 22999117 - 22999075
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    |||||||||||||||||||| || ||||||||| |||||||||    
22999117 ctaacaattttggcatttttacccgttgagctaggacttatgg 22999075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 4772346 - 4772303
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||    
4772346 cctaacaatttcagcatttt-gccagttgagctatgacttatgga 4772303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18055902 - 18055858
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||| |||||||| ||||||||||| |||||||| ||||||||||    
18055902 cctagcaattttgacatttttgccaattgagctaggacttatgga 18055858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 19134601 - 19134645
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| | ||||||| |||||||||||| ||||||||||    
19134601 cctaacaatttcgacattttttccagttgagctaggacttatgga 19134645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 42200947 - 42200990
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||    
42200947 cctaacaattttggca-ttttgccagttgagctaggacttctgga 42200990  T

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Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 13268057 - 13268103
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
13268057 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 13268103  T

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Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 28855499 - 28855537
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    |||||||||||||||| ||||||||||||||||| |||||    
28855499 cctaacaattttggca-ttttgccagttgagctaggactt 28855537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 40592359 - 40592313
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
40592359 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 40592313  T

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Target: chr4 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 55853398 - 55853443
Alignment:
22 acctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
55853398 acctaacaattttggcatttttgccagttgagctaggacttctgga 55853443  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 24870640 - 24870598
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
24870640 cctaacaatttcggcatttttgccagttgagctaggacttatg 24870598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 37759470 - 37759429
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
37759470 ctaacaatttcagcatttttgccagttgagctatgacttatg 37759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 32057805 - 32057849
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttat 64  Q
    |||||||||||||||| || ||||||||||||||||| |||||||    
32057805 cgacctaacaattttgacaattttgccagttgagctaggacttat 32057849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 17480975 - 17480942
Alignment:
23 cctaacaattttggcatttttgccagttgagcta 56  Q
    |||||||||||||||||||||| |||||||||||    
17480975 cctaacaattttggcatttttgtcagttgagcta 17480942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 30189183 - 30189142
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
30189183 ctaacaattttatcatttttgtcagttgagctatgacttatg 30189142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 42412073 - 42412117
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatggaa 68  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||    
42412073 cctaacaatttcggcatttt-gccagttgagctatgacttctggaa 42412117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 7512810 - 7512767
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
7512810 cctaacaattttggcatttt-gccagttgagctaggacttctgga 7512767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 13632133 - 13632089
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| | |||||||||||||||||||| ||||| ||||    
13632133 cctaacaatttcgacatttttgccagttgagctaggacttctgga 13632089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 13849401 - 13849357
Alignment:
21 gacctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||||| | |||||||| ||||||||||| ||||||||    
13849401 gacctaacaatttcgacatttttgtcagttgagctaggacttatg 13849357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 21156040 - 21156084
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||| |||||| |||||||||||||||||||||| ||||| ||||    
21156040 cctagcaatttcggcatttttgccagttgagctaggacttgtgga 21156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 28010136 - 28010179
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||    
28010136 cctaacaattttggca-ttttgccagttgagctaggacttctgga 28010179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 35273391 - 35273435
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| | |||||||||||||||||||| ||||| ||||    
35273391 cctaacaatttcgacatttttgccagttgagctaggacttgtgga 35273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 3084324 - 3084370
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
3084324 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 3084370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 4431977 - 4432020
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||| ||||||| |||||||||||||||||||| ||||| ||||    
4431977 ctaataattttgacatttttgccagttgagctaggacttgtgga 4432020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 24712134 - 24712088
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
24712134 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 24712088  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 10330848 - 10330804
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
10330848 cctaacaattttggcatttttgccagttgagctaggacttgtgga 10330804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 8977198 - 8977154
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
8977198 cctaacaatttgggcatttttgccagttgagctaagacttgtgga 8977154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 16496737 - 16496781
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
16496737 cctaacaatttcggcatttttgccagttgagctaggacttctgga 16496781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 2301461 - 2301496
Alignment:
20 cgacctaacaattttggcatttttgccagttgagcta 56  Q
    ||||||||||||||||||| |||||||||||||||||    
2301461 cgacctaacaattttggca-ttttgccagttgagcta 2301496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 28533484 - 28533440
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| ||||||||||||| |||| ||| ||||||||||    
28533484 cctaacaatttcggcatttttgccaattgaactaggacttatgga 28533440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 31444375 - 31444419
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||| ||||||||| ||||| ||||    
31444375 cctaacaatttcggcatttttgccggttgagctaggacttctgga 31444419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 4083633 - 4083587
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
4083633 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 4083587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 8939672 - 8939626
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
8939672 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 8939626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 10181091 - 10181045
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
10181091 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 10181045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 1833404 - 1833448
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
1833404 cctaacaatttcggcatttttgccagttgagctatgacttctgga 1833448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 40318870 - 40318914
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
40318870 cctaacaatttcggcatttttgccagttgagctatgacttctgga 40318914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 41408670 - 41408626
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
41408670 cctaacaatttcggcatttttgccagttgagctatgacttctgga 41408626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 8595572 - 8595615
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    ||||||||||| |||||||||||||||||||||| |||||||||    
8595572 cctaacaatttcggcatttttgccagttgagctaggacttatgg 8595615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 22792192 - 22792234
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgactt 62  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
22792192 cgacctaacaatttcggcatttttgccagttgagctaggactt 22792234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 21728704 - 21728660
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
21728704 cctaacaatttcggcatttttgccagttgagctaggacttctgga 21728660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 23074729 - 23074773
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
23074729 cctaacaatttcggcatttttgccagttgagctaggacttctgga 23074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 24406606 - 24406562
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||    
24406606 cctaataattttagcatttttgtcagttgagctatgacttatgga 24406562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 11408415 - 11408373
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    |||||||||||| ||||||||| |||||||||| |||||||||    
11408415 ctaacaattttgacatttttgctagttgagctaggacttatgg 11408373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 26526556 - 26526514
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||| || ||||||||||||||||||| ||||||||    
26526556 cctaacaatttcggtatttttgccagttgagctaagacttatg 26526514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 34856624 - 34856592
Alignment:
23 cctaacaattttggcatttttgccagttgagct 55  Q
    ||||||||||| |||||||||||||||||||||    
34856624 cctaacaatttcggcatttttgccagttgagct 34856592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 12262917 - 12262870
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||||||| ||||| ||| ||||| ||||    
12262917 cgacctaacaatttcggcatttttgccggttgaactaggacttttgga 12262870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 12707958 - 12708004
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
12707958 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 12708004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 16627574 - 16627613
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgactta 63  Q
    |||||||||| ||||||| |||||||||||||| ||||||    
16627574 ctaacaatttcggcatttatgccagttgagctaagactta 16627613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 38682971 - 38682933
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    |||||||||||||||| ||||||||||||||||| |||||    
38682971 cctaacaattttggca-ttttgccagttgagctaggactt 38682933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 42383134 - 42383181
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| ||||||||||||| |||| ||| ||| ||||||    
42383134 cgacctaacaatttcggcatttttgccaattgaactaggacatatgga 42383181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 11751255 - 11751211
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
11751255 cctaacaatttcggcatttttgccagttgagctaggacttatgga 11751211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10662028 - 10661984
Alignment:
22 acctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||    
10662028 acctaacaatttcggcatttttgtcagttgaactatgacttatgg 10661984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 28171064 - 28171108
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
28171064 cctaacaatttcggcatttttgccagttgagctaggacttctgga 28171108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 47069050 - 47069006
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
47069050 cctaacaatttcggcatttttgccagttgagctaagacttctgga 47069006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 40840212 - 40840173
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    ||||||||||| |||||||||||||||||||||| |||||    
40840212 cctaacaatttcggcatttttgccagttgagctaggactt 40840173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 3440769 - 3440735
Alignment:
23 cctaacaattttggcatttttgccagttgagctat 57  Q
    ||||||||||| |||||||||||||||||||||||    
3440769 cctaacaatttcggcatttttgccagttgagctat 3440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 9583508 - 9583541
Alignment:
23 cctaacaattttggcatttttgccagttgagcta 56  Q
    ||||||||||| ||||||||||||||||||||||    
9583508 cctaacaatttcggcatttttgccagttgagcta 9583541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 37928882 - 37928837
Alignment:
22 acctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||||    
37928882 acctaacaattttgacatttttgtcagttgagctaagacttgtgga 37928837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 1562841 - 1562809
Alignment:
20 cgacctaacaattttggcatttttgccagttga 52  Q
    |||||||||||||| ||||||||||||||||||    
1562841 cgacctaacaatttcggcatttttgccagttga 1562809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 4976793 - 4976836
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||    
4976793 cctaacaattttggca-ttttgccagttgagctaggacttctgga 4976836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 7131578 - 7131622
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| ||||||| ||||| ||||| ||||||||||    
7131578 cctaacaattttggtatttttgtcagttaagctaagacttatgga 7131622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 10071601 - 10071645
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||||| |||||||| ||||||||||| ||||| ||||    
10071601 cctaacaattttgacatttttgtcagttgagctaggacttgtgga 10071645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 11029707 - 11029663
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| | |||||||||||||||||||| ||||| ||||    
11029707 cctaacaatttcgacatttttgccagttgagctaggacttctgga 11029663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 29212150 - 29212193
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||    
29212150 cctaacaatttcggcatttt-gccagttgagctaggacttatgga 29212193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 48555879 - 48555836
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||||||| |||||||||| || ||||||||||    
48555879 cctaacaattttggcatttt-gccagttgaggtaggacttatgga 48555836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 15003674 - 15003628
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||| ||||    
15003674 cgacctaacaattttggca-ttttgccagttgaactaggacttctgga 15003628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 41464710 - 41464664
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
41464710 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 41464664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 44037526 - 44037572
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
44037526 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 44037572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 6328258 - 6328301
Alignment:
22 acctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
6328258 acctaacaattttgacatttttgccagttgagctaagacttatg 6328301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 45957421 - 45957461
Alignment:
25 taacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
45957421 taacaattttggcatttttgccaattgagctaggacttatg 45957461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 47182845 - 47182803
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
47182845 ctaacaattttggcatttt-gccagttgagctaggacttatgga 47182803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 8059891 - 8059846
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||||||||||||||| ||||||||||| |||||| | ||||||||    
8059891 cgacctaacaattttgacatttttgccaattgagccaggacttatg 8059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22702441 - 22702396
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||| ||||||||| | || ||||||||||||||||||||||||||    
22702441 cgacttaacaatttcgacaattttgccagttgagctatgacttatg 22702396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 6596585 - 6596542
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
6596585 cctaacaattttggcatttt-gccagttgagctaggacttctgga 6596542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 33228743 - 33228699
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| | |||||||||||||||||||| ||||| ||||    
33228743 cctaacaatttcgacatttttgccagttgagctaggacttctgga 33228699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 40013307 - 40013263
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||| ||||||||||| ||||| ||||    
40013307 cctaacaatttcggcatttttgtcagttgagctaggacttctgga 40013263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 40677061 - 40677017
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||||||||||||||||| |||| ||| ||||| ||||    
40677061 cctaacaattttggcatttttgccaattgaactaggacttgtgga 40677017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 47086385 - 47086429
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| | |||||||| ||||||||||| ||||||||||    
47086385 cctaacaatttcgacatttttgtcagttgagctaggacttatgga 47086429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 1869859 - 1869820
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    ||||||||| | |||||||||||||||||||||| |||||    
1869859 cctaacaatatcggcatttttgccagttgagctaggactt 1869820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 6344368 - 6344411
Alignment:
22 acctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||||| ||||||| ||||||| |||||||||||| ||||||||    
6344368 acctaaaaattttgacatttttaccagttgagctaggacttatg 6344411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 7312538 - 7312576
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    |||||||||||||||| ||||||||||||||||| |||||    
7312538 cctaacaattttggca-ttttgccagttgagctaggactt 7312576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 12964581 - 12964620
Alignment:
26 aacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||||||| ||||||||| |||||||||||| ||||||||    
12964581 aacaatttcggcatttttaccagttgagctaggacttatg 12964620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 18110478 - 18110443
Alignment:
21 gacctaacaattttggcatttttgccagttgagcta 56  Q
    |||||||| |||||||||||||| ||||||||||||    
18110478 gacctaactattttggcatttttaccagttgagcta 18110443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 34708717 - 34708678
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    ||||||||| | |||||||||||||||||||||| |||||    
34708717 cctaacaatatcggcatttttgccagttgagctaggactt 34708678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 44136210 - 44136245
Alignment:
20 cgacctaacaattttggcatttttgccagttgagct 55  Q
    |||||||||||||| || ||||||||||||||||||    
44136210 cgacctaacaatttcggtatttttgccagttgagct 44136245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 45041815 - 45041861
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
45041815 cgacctaacaatttcggcatttt-gccagttgagctaagacttctgga 45041861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 46274994 - 46274947
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| ||||||||| || |||||||||  |||||||||    
46274994 cgacctaacaatttcggcatttttaccggttgagctagaacttatgga 46274947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 7204593 - 7204636
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    ||||||||||| |||||||||||||||||||||| |||||||||    
7204593 cctaacaatttcggcatttttgccagttgagctaggacttatgg 7204636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 270406 - 270450
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
270406 cctaacaatttcggcatttttgccagttgagctaggacttctgga 270450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 23225372 - 23225419
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||| ||||||| |||||||||||| ||||| ||||    
23225372 cgacctaacaattttgacatttttaccagttgagctaggacttgtgga 23225419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 44836200 - 44836246
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    ||||||||||||||||  |||||||||||||| |||| |||||||||    
44836200 cgacctaacaattttgatatttttgccagttgtgctaggacttatgg 44836246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 15331144 - 15331188
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||    
15331144 cgacctaacaatttcggcattttt-ccagttgagctaggacttatg 15331188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 43086556 - 43086599
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||    
43086556 cctaacaatttcggcatttt-gccagttgagctaggacttatgga 43086599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 49632598 - 49632554
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| ||||||||| |||||||| ||| ||||||||||    
49632598 cctaacaatttcggcatttttaccagttgaactaggacttatgga 49632554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 5598347 - 5598301
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| ||||    
5598347 cgacctaacaatttcggcattttt-ccagttgagctaggacttctgga 5598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 10430424 - 10430463
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    ||||||||||| |||||||||| ||||||||||| |||||    
10430424 cctaacaatttcggcatttttgtcagttgagctaggactt 10430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 39606448 - 39606409
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgactt 62  Q
    ||||||||| | |||||||||||||||||||||| |||||    
39606448 cctaacaatatcggcatttttgccagttgagctaggactt 39606409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 45611546 - 45611589
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    ||||||||||| |||||||||| |||||||||||  ||||||||    
45611546 cctaacaatttcggcatttttgtcagttgagctagaacttatgg 45611589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 33128250 - 33128293
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgg 66  Q
    |||||||||||  |||||||||| ||||||||||||||||||||    
33128250 cctaacaatttcagcatttttgctagttgagctatgacttatgg 33128293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 40216823 - 40216780
Alignment:
23 cctaacaatttt-ggcatttttgccagttgagctatgacttatg 65  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
40216823 cctaacaattttcggcatttttgccagttgagctaggacttatg 40216780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 1522736 - 1522694
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||| || ||||||||||||||||||| ||||||||    
1522736 cctaacaatttcggtatttttgccagttgagctaggacttatg 1522694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 12321030 - 12320988
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatg 65  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||    
12321030 cctaacaattttgacatttttgtcagttgagctaggacttatg 12320988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 30090001 - 30089963
Alignment:
24 ctaacaattttggcatttttgccagttgagctatgactt 62  Q
    |||||||||| ||||||||||| ||||||||||||||||    
30090001 ctaacaatttcggcatttttgcaagttgagctatgactt 30089963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 6229265 - 6229309
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||| |||||||||||||||||| ||||||||| ||||| ||||    
6229265 cctaataattttggcatttttgcccgttgagctaggacttgtgga 6229309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 19649583 - 19649626
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||    
19649583 cctaacaatttcggcatttt-gccagttgagctatgacttctgga 19649626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 24655017 - 24654974
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
24655017 cctaacaattttggcatttt-gccagttgagctaggacttctgga 24654974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 25063383 - 25063339
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||||||||||||| ||| ||||| ||||    
25063383 cctaacaatttcggcatttttgccagttgaactaggacttctgga 25063339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 25250828 - 25250785
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
25250828 cctaacaattttggcatttt-gccagttgagctaggacttctgga 25250785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 37708532 - 37708575
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||    
37708532 cctaacaatttcggcatttt-gccagttgagctaggacttatgga 37708575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 3673926 - 3673961
Alignment:
21 gacctaacaattttggcatttttgccagttgagcta 56  Q
    ||||||||||||| | ||||||||||||||||||||    
3673926 gacctaacaatttcgacatttttgccagttgagcta 3673961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 4312179 - 4312133
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
4312179 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 4312133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 4694769 - 4694815
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| | |||||| ||||||||||||| ||||||||||    
4694769 cgacctaacaatttcgacatttt-gccagttgagctaggacttatgga 4694815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 8547212 - 8547258
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
8547212 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 8547258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 11109944 - 11109983
Alignment:
25 taacaattttggcatttttgccagttgagctatgacttat 64  Q
    ||||||||||||||||||| || ||||||||| |||||||    
11109944 taacaattttggcatttttaccggttgagctaagacttat 11109983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 28183796 - 28183843
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatggaact 70  Q
    ||||| ||||| |||||||||| ||||||||||| |||||||| ||||    
28183796 cctaataatttcggcatttttgtcagttgagctaagacttatgaaact 28183843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 34711637 - 34711683
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
34711637 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 34711683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 36586528 - 36586482
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||    
36586528 cgacctaacaatttcggcatttt-gccagttgagctaggacttctgga 36586482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 37817422 - 37817376
Alignment:
20 cgacctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    |||||||||||||| | |||||| ||||||||||||| ||||||||||    
37817422 cgacctaacaatttcgtcatttt-gccagttgagctaggacttatgga 37817376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 8944 - 8987
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||    
8944 cctaacaatttcggcatttt-gccagttgagctatgacttctgga 8987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 160491 - 160447
Alignment:
23 cctaacaattttggcatttttgccagttgagctatgacttatgga 67  Q
    ||||||||||| ||||||||| |||||||||||| ||||| ||||    
160491 cctaacaatttcggcatttttaccagttgagctaggacttctgga 160447  T

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