View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9303-LTR4-TNT-insertion-4 (Length: 106)

Name: F9303-LTR4-TNT-insertion-4
Description: F9303-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9303-LTR4-TNT-insertion-4
F9303-LTR4-TNT-insertion-4
[»] chr1 (2 HSPs)
chr1 (8-96)||(48235395-48235483)
chr1 (8-78)||(48230372-48230443)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 48235483 - 48235395
Alignment:
8 ggacagacatgtatagtctaacctttgaaaagtggcaaggttggataagtagacgcgtttccttcaactttctcgcatgcgcatcatta 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48235483 ggacagacatgtatagtctaacctttgaaaagtggcaaggttggataagtagacgcgtttccttcaactttctcgcatgcgcatcatta 48235395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 48230443 - 48230372
Alignment:
8 ggacagacatgtatagtctaacctttgaaaagtggcaaggttggataagt-agacgcgtttccttcaacttt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
48230443 ggacagacatgtatagtctaacctttgaaaagtggcaaggttggataagtaagacacgtttccttcaacttt 48230372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 47149 times since January 2019
Visitors: 6756