View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9303-LTR4-TNT-insertion-6 (Length: 280)
Name: F9303-LTR4-TNT-insertion-6
Description: F9303-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9303-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 34466765 - 34467025
Alignment:
| Q |
11 |
tatcatccatgtgttgtgttatttttacttgttaattaataattgggttgagttgcagattgaatgaggatatgattgagtcactattcatggcaaataa |
110 |
Q |
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| T |
34466765 |
tatcatccatgtgttgtgttatttttacttgttaattaataattgggttgagttgcagattgaatgaggatatgattgagtcactattcatggcaaataa |
34466864 |
T |
|
| Q |
111 |
tcccaattctagtggaaattctgctttggcttctaatcctaaagataatgctaggcatcaaataattcatgcttctccaatgccacctgaaaatagggta |
210 |
Q |
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| T |
34466865 |
ttccaattctagtggaaattctgctttggcttctaatcctaaagataatgctaggcatcaaataattcatgcttctccaatgccacctgaaaatagggta |
34466964 |
T |
|
| Q |
211 |
cttgatcctaagaagtctcagaacattgccattttgcttcgagcactgaatgtaataattg |
271 |
Q |
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| T |
34466965 |
cttgatcctaagaagtctcagaacattgccattttgcttcgagcactgaatgtaacaattg |
34467025 |
T |
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