View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9303-LTR4-TNT-insertion-9 (Length: 112)

Name: F9303-LTR4-TNT-insertion-9
Description: F9303-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9303-LTR4-TNT-insertion-9
F9303-LTR4-TNT-insertion-9
[»] chr7 (1 HSPs)
chr7 (9-103)||(7112161-7112255)
[»] chr1 (1 HSPs)
chr1 (9-103)||(9976679-9976778)
[»] chr3 (2 HSPs)
chr3 (72-103)||(5695956-5695987)
chr3 (72-103)||(5794439-5794470)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 6e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 7112161 - 7112255
Alignment:
9 attatataagttagaagatattaaattttattattcaatatgtagtttacttttcattttcccccaacttttatgcatgaaaatcatatcaattg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7112161 attatataagttagaagatattaaattttattattcaatatgtagtttacttttcattttcccccaacttttatgcatgaaaatcatatcaattg 7112255  T

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Target: chr1 (Bit Score: 36; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 9976778 - 9976679
Alignment:
9 attatataagttagaagatattaaattttattattcaatatgtagtttacttttc-----attttcccccaacttttatgcatgaaaatcatatcaattg 103  Q
    ||||| |||| |||||||||||||||||||  ||||||||||||||||  |||||      |||||| |||| ||||||||||| ||||| |||||||||    
9976778 attatttaaggtagaagatattaaattttaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcctatcaattg 9976679  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 103
Target Start/End: Complemental strand, 5695987 - 5695956
Alignment:
72 ccaacttttatgcatgaaaatcatatcaattg 103  Q
    |||||||||||||| |||||||||||||||||    
5695987 ccaacttttatgcacgaaaatcatatcaattg 5695956  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 103
Target Start/End: Complemental strand, 5794470 - 5794439
Alignment:
72 ccaacttttatgcatgaaaatcatatcaattg 103  Q
    |||||||||||||| |||||||||||||||||    
5794470 ccaacttttatgcacgaaaatcatatcaattg 5794439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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