View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9306-LTR4-TNT-insertion-1 (Length: 437)
Name: F9306-LTR4-TNT-insertion-1
Description: F9306-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9306-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 8901873 - 8902292
Alignment:
| Q |
10 |
aacaaagtcaccttcatcaagaatgggcttcacaatagcatactgtctcctcaacactgaatgtcggtttttgagtttttccttatcccatttcagacct |
109 |
Q |
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| T |
8901873 |
aacaaagtcaccttcatcaagaatgggcttcacaatagcatactgtctcctcaacactgaatgtcggtttttgagtttttccttatcccatttcagacct |
8901972 |
T |
|
| Q |
110 |
gttttgttgtgaaatccatcacaaatatgtttccatgctttcttattgaatgaattgttttgcttgttccctttgtgtacttggtcaactatcaaatctg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8901973 |
gttttgttgtgaaatccatcacaaatatgtttccatgctttcttattgaatgaattgttttgcttgttccctttgtgtacttggtcaaccatcaaatctg |
8902072 |
T |
|
| Q |
210 |
ccagtatcttagtaagtgatgctgtccacttagcccttgactgttctagctgctgcgtttctagccttcttgatctggtaattcggcgtgccatctatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8902073 |
ccagtatcttagtaagtgatgctgtccacttagcccttgactgttctagctgctgcgtttctagccttcttgatctggtaattcggcgtgccatctatat |
8902172 |
T |
|
| Q |
310 |
tttaactaacataagtaatcgataaagaggagtttaaacacatacagtcacacacaatatacactcatgaaaacacatgtttgcataaacctaagaggat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8902173 |
tttaactaacataagtaatcgataaagaggagtttaaacacatacagtcacacacaatatacactcatgaaaacacatgtttgcataaacctaagaggat |
8902272 |
T |
|
| Q |
410 |
gatcatagcaagagtgaatt |
429 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8902273 |
gatcatagcaagagtgaatt |
8902292 |
T |
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