View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9306-LTR4-TNT-insertion-3 (Length: 598)
Name: F9306-LTR4-TNT-insertion-3
Description: F9306-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9306-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 40178595 - 40178395
Alignment:
| Q |
9 |
gaatctataacaaaatggaagagaaagttactcttactcatccattgatacaagatcgcgaagaaacaaatttatggttgcagttcttggcattctttta |
108 |
Q |
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| T |
40178595 |
gaatctataacaaaatggaagagaaagttactcttactcatccattgatacaagatcgcgaagaaacaaatttatggttgcagttcttggcattctttta |
40178496 |
T |
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| Q |
109 |
aaatttcaatcgaccattttattatttatagctcagtcgagagtagtaaaggagaaattatgctgagtttcatgtctgatcccagtaaaattgactctat |
208 |
Q |
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| T |
40178495 |
aaatttcaatcgaccattttattatttatagctcagtcgagagtagtaaaggagaaattatgctgagtttcatgtctgatcccagtaaaattgactctat |
40178396 |
T |
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| Q |
209 |
c |
209 |
Q |
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| |
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| T |
40178395 |
c |
40178395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 437 - 575
Target Start/End: Complemental strand, 40178167 - 40178029
Alignment:
| Q |
437 |
gaagaacaaaggtgtagtttttcagcacgatcgatggatgttcttaggctatgtttggtaatgtcaataatctaatttatagtttatcgaatttgtttac |
536 |
Q |
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| T |
40178167 |
gaagaacaaaggtgtagtttttcagcacgatcgatggatgttcttaggctatgtttggtaatgtcaataatctaatttatagtttatcgaatttgtttac |
40178068 |
T |
|
| Q |
537 |
aagtatgtttgataaaattgaatggtgtttgataacaag |
575 |
Q |
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| T |
40178067 |
aagtatgtttgataaaattgaatggtgtttgataacaag |
40178029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 40178333 - 40178207
Alignment:
| Q |
271 |
agagagggatgaaaatactcatgtgtgtctatttctttccaatactttggtttaacnnnnnnnnnnnnnnnnnnactttcttgagggctaatgctgaaat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40178333 |
agagagggatgaaaatactcatgtgtgtctatttctttccaatactttggtttaacttttttttgttttgttttactttcttgagggctaatgctgaaat |
40178234 |
T |
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| Q |
371 |
ttgttccttgtgtaatttgctgacata |
397 |
Q |
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| T |
40178233 |
ttgttccttgtgtaatttgctgacata |
40178207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 41536327 - 41536397
Alignment:
| Q |
49 |
tccattgatacaagatcgcgaagaaacaaatttatggttgcagttcttggcattcttttaaaatttcaatc |
119 |
Q |
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| T |
41536327 |
tccattgatacaagatcgcgaagagagaaaggtatggttgcagtttttacaattttcttaaaatttcaatc |
41536397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 510
Target Start/End: Original strand, 46334645 - 46334673
Alignment:
| Q |
482 |
aggctatgtttggtaatgtcaataatcta |
510 |
Q |
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|
| T |
46334645 |
aggctatgtttggtaatgtcaataatcta |
46334673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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