View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9306-LTR4-TNT-insertion-5 (Length: 130)
Name: F9306-LTR4-TNT-insertion-5
Description: F9306-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9306-LTR4-TNT-insertion-5 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 36379424 - 36379538
Alignment:
| Q |
10 |
ggggacccatttaaataagttagttattnnnnnnnnnnnnnttgaagtgatattttagagctccttcatcactagacataactcctccatttccccattt |
109 |
Q |
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| T |
36379424 |
ggggacccatttaaataagttagttattaaaaataaaaaaattgaagtgatattttagagctccttcatcactagacataactcctccatttccccattt |
36379523 |
T |
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| Q |
110 |
tcatttatacaattg |
124 |
Q |
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||||||||||||||| |
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| T |
36379524 |
tcatttatacaattg |
36379538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 86325 - 86398
Alignment:
| Q |
51 |
ttgaagtgatattttagagctccttcatcactagacataactcctccatttccccattttcatttatacaattg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86325 |
ttgaagtgatattttagagctccttcatcactagacataactcctccatttccccattttcatttatacaattg |
86398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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