View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9307-LTR4-TNT-insertion-2 (Length: 281)
Name: F9307-LTR4-TNT-insertion-2
Description: F9307-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9307-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 38720194 - 38719934
Alignment:
| Q |
11 |
ccttacaccaacctgtttgcaaaaatcagaaaattagttcctctttcagagattggtcaatattatgcaaaataactgtacacaatgtagaaacttgaca |
110 |
Q |
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| T |
38720194 |
ccttacaccaacctgtttgcaaaaatcagaaaattagttcctctttcagagattggtcaatattatgcaaaataactgtacacaatgtagaaacttgaca |
38720095 |
T |
|
| Q |
111 |
ggctaatattggattttagtaaattttgataatattgagcaaagtgttttgagaaaaactcaagccccatattaaaaagatataatgtttgaaaattgtt |
210 |
Q |
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| T |
38720094 |
ggctaatattggattttagtaaattttgataatattgagcaaagtgttttgagaaaaactcaagccccatattaaaaagatataatgtttgaaaattgtt |
38719995 |
T |
|
| Q |
211 |
tataaagaaaaaagaatcattttacaaacagttttgtatgaatgaattaaaactaatatta |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719994 |
tataaagaaaaaagaatcattttacaaacagttttgtatgaatgaattaaaactaatatta |
38719934 |
T |
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